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Magnesium in PDB 5shy: Crystal Structure of Human Phosphodiesterase 10 in Complex with [8- [(2-Methyl-1,3-Thiazol-4-Yl)Amino]-5-Pyridin-3-Yl-1,7-Naphthyridin-2- Yl]Methanol

Enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with [8- [(2-Methyl-1,3-Thiazol-4-Yl)Amino]-5-Pyridin-3-Yl-1,7-Naphthyridin-2- Yl]Methanol

All present enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with [8- [(2-Methyl-1,3-Thiazol-4-Yl)Amino]-5-Pyridin-3-Yl-1,7-Naphthyridin-2- Yl]Methanol:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with [8- [(2-Methyl-1,3-Thiazol-4-Yl)Amino]-5-Pyridin-3-Yl-1,7-Naphthyridin-2- Yl]Methanol, PDB code: 5shy was solved by C.Joseph, J.Benz, A.Flohr, P.Schnider, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.93 / 2.30
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 142.08, 142.08, 142.08, 90, 90, 90
R / Rfree (%) 19.3 / 24.9

Other elements in 5shy:

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with [8- [(2-Methyl-1,3-Thiazol-4-Yl)Amino]-5-Pyridin-3-Yl-1,7-Naphthyridin-2- Yl]Methanol also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 3 atoms
Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Phosphodiesterase 10 in Complex with [8- [(2-Methyl-1,3-Thiazol-4-Yl)Amino]-5-Pyridin-3-Yl-1,7-Naphthyridin-2- Yl]Methanol (pdb code 5shy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Phosphodiesterase 10 in Complex with [8- [(2-Methyl-1,3-Thiazol-4-Yl)Amino]-5-Pyridin-3-Yl-1,7-Naphthyridin-2- Yl]Methanol, PDB code: 5shy:

Magnesium binding site 1 out of 1 in 5shy

Go back to Magnesium Binding Sites List in 5shy
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with [8- [(2-Methyl-1,3-Thiazol-4-Yl)Amino]-5-Pyridin-3-Yl-1,7-Naphthyridin-2- Yl]Methanol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Phosphodiesterase 10 in Complex with [8- [(2-Methyl-1,3-Thiazol-4-Yl)Amino]-5-Pyridin-3-Yl-1,7-Naphthyridin-2- Yl]Methanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:41.2
occ:1.00
 O A:HOH933 2.0 37.5 1.0
O A:HOH938 2.1 48.6 1.0
O A:HOH909 2.1 48.3 1.0
O A:HOH973 2.1 60.1 1.0
OD1 A:ASP564 2.1 41.8 1.0
O A:HOH954 2.3 39.3 1.0
CG A:ASP564 3.2 39.4 1.0
OD2 A:ASP564 3.5 47.7 1.0
O A:HOH957 3.6 57.6 1.0
K A:K803 3.6 68.1 1.0
ZN A:ZN801 3.9 46.2 1.0
NE2 A:HIS595 3.9 42.5 1.0
OE2 A:GLU592 4.1 43.1 1.0
CD2 A:HIS567 4.2 48.7 1.0
O A:HOH925 4.2 56.7 1.0
OG1 A:THR633 4.2 37.3 1.0
NE2 A:HIS567 4.3 53.4 1.0
CD2 A:HIS595 4.3 43.5 1.0
CD2 A:HIS563 4.3 40.0 1.0
O A:HIS563 4.4 40.1 1.0
CB A:ASP564 4.5 40.2 1.0
O A:HOH968 4.6 42.1 1.0
O A:THR633 4.6 46.0 1.0
CB A:THR633 4.7 41.9 1.0
OD2 A:ASP674 4.7 45.2 1.0
NE2 A:HIS563 4.8 36.7 1.0
CD2 A:HIS525 4.8 48.6 1.0
CA A:ASP564 4.8 37.9 1.0
CG A:GLU592 4.9 46.8 1.0
CD A:GLU592 4.9 46.9 1.0

Reference:

A.Flohr, D.Schlatter, B.Kuhn, M.G.Rudolph. Crystal Structure of A Human Phosphodiesterase 10 Complex To Be Published.
Page generated: Wed Apr 5 11:28:02 2023

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