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Magnesium in PDB 5t41: Crystal Structure of Mycobacterium Avium SERB2 Mutant S275A/R279A at pH 6.6 with Ethylene Glycol Bound at Act- I Domain

Enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 Mutant S275A/R279A at pH 6.6 with Ethylene Glycol Bound at Act- I Domain

All present enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 Mutant S275A/R279A at pH 6.6 with Ethylene Glycol Bound at Act- I Domain:
3.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Avium SERB2 Mutant S275A/R279A at pH 6.6 with Ethylene Glycol Bound at Act- I Domain, PDB code: 5t41 was solved by S.Shree, S.Dubey, R.Ramachandran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.00 / 3.15
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 68.817, 108.792, 132.174, 90.00, 90.00, 90.00
R / Rfree (%) 23.7 / 29.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Avium SERB2 Mutant S275A/R279A at pH 6.6 with Ethylene Glycol Bound at Act- I Domain (pdb code 5t41). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mycobacterium Avium SERB2 Mutant S275A/R279A at pH 6.6 with Ethylene Glycol Bound at Act- I Domain, PDB code: 5t41:

Magnesium binding site 1 out of 1 in 5t41

Go back to Magnesium Binding Sites List in 5t41
Magnesium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Avium SERB2 Mutant S275A/R279A at pH 6.6 with Ethylene Glycol Bound at Act- I Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Avium SERB2 Mutant S275A/R279A at pH 6.6 with Ethylene Glycol Bound at Act- I Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:40.1
occ:1.00
 OD2 A:ASP187 1.9 55.2 1.0
O A:ASP189 2.0 56.8 1.0
O A:HOH603 2.1 40.5 1.0
O A:HOH601 2.1 38.7 1.0
OD1 A:ASP343 2.1 58.0 1.0
CG A:ASP187 3.1 54.2 1.0
O A:HOH615 3.1 44.2 1.0
C A:ASP189 3.2 56.8 1.0
CG A:ASP343 3.3 58.9 1.0
OD1 A:ASP187 3.6 54.0 1.0
CA A:ASP189 3.8 56.4 1.0
OD2 A:ASP343 3.9 60.4 1.0
CB A:ASP189 3.9 57.2 1.0
N A:ASP189 3.9 55.0 1.0
N A:SER190 4.3 57.5 1.0
CB A:ASP187 4.3 53.4 1.0
OD2 A:ASP347 4.4 57.0 1.0
CB A:SER190 4.5 59.5 1.0
OG1 A:THR191 4.5 54.6 1.0
CB A:ASP343 4.5 58.5 1.0
OE2 A:GLU196 4.6 61.1 1.0
OG A:SER190 4.6 60.5 1.0
C A:VAL188 4.7 54.2 1.0
CA A:SER190 4.7 58.2 1.0
C A:SER190 4.9 57.1 1.0
OE1 A:GLU196 4.9 60.7 1.0
N A:THR191 4.9 55.6 1.0
OD2 A:ASP189 5.0 56.0 1.0
N A:ASP343 5.0 57.2 1.0
N A:VAL188 5.0 52.8 1.0
CG A:ASP189 5.0 56.8 1.0

Reference:

S.Shree, R.Ramachandran. Crystal Structure of Mycobacterium Avium SERB2 (MAV_3907) at pH 6.6 To Be Published.
Page generated: Mon Sep 30 04:43:46 2024

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