Magnesium in PDB 5t8t: Crystal Structure of A S-Adenosylmethionine Synthase From Neisseria Gonorrhoeae with Bound Amp and Magnesium

Enzymatic activity of Crystal Structure of A S-Adenosylmethionine Synthase From Neisseria Gonorrhoeae with Bound Amp and Magnesium

All present enzymatic activity of Crystal Structure of A S-Adenosylmethionine Synthase From Neisseria Gonorrhoeae with Bound Amp and Magnesium:
2.5.1.6;

Protein crystallography data

The structure of Crystal Structure of A S-Adenosylmethionine Synthase From Neisseria Gonorrhoeae with Bound Amp and Magnesium, PDB code: 5t8t was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.50 / 2.10
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 116.580, 116.580, 145.600, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 20.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A S-Adenosylmethionine Synthase From Neisseria Gonorrhoeae with Bound Amp and Magnesium (pdb code 5t8t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A S-Adenosylmethionine Synthase From Neisseria Gonorrhoeae with Bound Amp and Magnesium, PDB code: 5t8t:

Magnesium binding site 1 out of 1 in 5t8t

Go back to Magnesium Binding Sites List in 5t8t
Magnesium binding site 1 out of 1 in the Crystal Structure of A S-Adenosylmethionine Synthase From Neisseria Gonorrhoeae with Bound Amp and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A S-Adenosylmethionine Synthase From Neisseria Gonorrhoeae with Bound Amp and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:39.0
occ:1.00
 OD2 B:ASP17 2.1 27.1 1.0
O2P B:AMP401 2.7 45.2 0.6
CG B:ASP17 3.1 25.6 1.0
O B:HOH501 3.2 53.1 1.0
O3P B:AMP401 3.3 52.2 0.6
OD1 B:ASP17 3.4 22.9 1.0
NZ B:LYS250 3.4 22.7 1.0
O A:HOH417 3.4 42.2 1.0
P B:AMP401 3.5 43.2 0.6
NH2 B:ARG249 3.6 21.6 1.0
O B:HOH553 3.9 22.0 1.0
O B:HOH503 3.9 46.5 1.0
NE B:ARG249 4.0 21.8 1.0
CZ B:ARG249 4.1 21.2 1.0
CB B:ARG249 4.1 18.3 1.0
O B:ARG249 4.3 23.9 1.0
O1P B:AMP401 4.4 55.9 0.6
O B:HOH520 4.4 25.2 1.0
CB B:ASP17 4.4 16.9 1.0
CE1 B:HIS15 4.6 24.3 1.0
OD2 B:ASP243 4.7 40.0 1.0
O5' B:AMP401 4.7 43.3 0.6
CE B:LYS250 4.8 27.6 1.0
CG B:ARG249 4.9 21.0 1.0
OE2 A:GLU43 5.0 23.1 1.0

Reference:

D.M.Dranow, S.L.Delker, D.D.Lorimer, T.E.Edwards. Crystal Structure of A S-Adenosylmethionine Synthase From Neisseria Gonorrhoeae with Bound Amp and Magnesium To Be Published.
Page generated: Mon Dec 14 21:11:34 2020

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