Magnesium in PDB 5t96: Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex

The structure of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex, PDB code: 5t96 was solved by J.D.Cook, A.Sultana, J.E.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.40 / 2.00
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	82.480, 87.568, 95.534, 97.14, 113.50, 114.68
R / Rfree (%)	13.9 / 18.3

The binding sites of Magnesium atom in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex (pdb code 5t96). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex, PDB code: 5t96:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:26.9 occ:1.00 O A:HOH535 2.1 29.8 1.0 OD1 B:ASP313 2.1 32.8 1.0 OD1 C:ASP313 2.1 29.8 1.0 O B:HOH511 2.2 32.5 1.0 OD1 A:ASP313 2.2 30.2 1.0 O C:HOH511 2.2 22.5 1.0 CG B:ASP313 3.0 39.7 1.0 CG C:ASP313 3.0 34.0 1.0 CG A:ASP313 3.1 34.6 1.0 OD2 C:ASP313 3.2 37.9 1.0 OD2 B:ASP313 3.3 33.1 1.0 OD2 A:ASP313 3.4 34.7 1.0 HD22 A:LEU309 4.2 41.5 1.0 HD22 C:LEU309 4.3 44.9 1.0 CB B:ASP313 4.5 35.0 1.0 HD22 B:LEU309 4.5 41.2 1.0 CB C:ASP313 4.5 28.3 1.0 O C:LEU309 4.5 33.7 1.0 HA C:ASP313 4.5 44.5 1.0 HA B:ASP313 4.5 45.1 1.0 HA A:ASP313 4.5 34.9 1.0 CB A:ASP313 4.5 31.4 1.0 O B:LEU309 4.5 35.4 1.0 HB3 B:LEU309 4.5 44.9 1.0 O A:LEU309 4.6 31.3 1.0 HB3 A:LEU309 4.6 31.4 1.0 HB3 C:LEU309 4.6 41.1 1.0 H B:ASP313 4.7 44.5 1.0 H A:ASP313 4.7 30.0 1.0 H C:ASP313 4.8 33.4 1.0 CA B:ASP313 4.9 37.6 1.0 CA C:ASP313 4.9 37.1 1.0 HD23 A:LEU309 4.9 41.5 1.0 CA A:ASP313 4.9 29.1 1.0 HD12 C:ILE316 4.9 37.1 1.0 HG22 A:THR312 4.9 42.7 1.0 HB3 C:ASP313 4.9 33.9 1.0 HB3 B:ASP313 4.9 42.1 1.0 N B:ASP313 4.9 37.1 1.0 N A:ASP313 5.0 25.0 1.0 HG22 C:THR312 5.0 39.5 1.0 N C:ASP313 5.0 27.8 1.0 HB3 A:ASP313 5.0 37.6 1.0 HB2 B:ASP313 5.0 42.1 1.0 HB2 C:ASP313 5.0 33.9 1.0

Magnesium binding site 2 out of 6 in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:57.5 occ:1.00 O A:HOH734 2.0 54.9 1.0 O A:HOH531 2.3 41.8 1.0 O A:HOH665 2.3 40.1 1.0 O A:HOH651 2.3 53.8 1.0 O A:HOH782 2.4 52.1 1.0 HA A:ASP243 3.3 40.2 1.0 OD1 A:ASP243 3.7 57.1 1.0 O A:HOH511 4.0 42.6 1.0 O A:HOH698 4.2 49.2 1.0 CA A:ASP243 4.2 33.5 1.0 O A:LEU242 4.5 29.9 1.0 O A:GLU241 4.5 33.2 1.0 N A:ASP243 4.6 29.8 1.0 C A:LEU242 4.7 29.9 1.0 CG A:ASP243 4.8 53.2 1.0 O A:VAL240 4.9 34.8 1.0

Magnesium binding site 3 out of 6 in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:65.8 occ:1.00 O B:HOH765 2.0 47.8 1.0 O B:HOH736 2.0 58.7 1.0 O B:HOH704 2.1 68.7 1.0 O B:HOH769 2.1 42.5 1.0 O B:HOH558 2.2 75.5 1.0 O B:HOH528 2.4 46.2 1.0 HA B:ASP243 3.6 40.1 1.0 O B:HOH651 4.0 54.0 1.0 OD1 B:ASP243 4.2 45.9 1.0 O B:LEU242 4.3 28.4 1.0 O B:HOH748 4.3 60.5 1.0 O B:VAL240 4.4 27.7 1.0 O B:GLU241 4.4 29.2 1.0 CA B:ASP243 4.5 33.4 1.0 C B:LEU242 4.6 29.7 1.0 HA B:GLU241 4.6 39.2 1.0 C B:GLU241 4.7 33.9 1.0 N B:ASP243 4.8 33.3 1.0

Magnesium binding site 4 out of 6 in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:41.7 occ:1.00 O D:HOH510 2.0 37.0 1.0 OD1 E:ASP313 2.1 57.6 1.0 OD1 D:ASP313 2.2 55.8 1.0 O F:HOH514 2.2 44.2 1.0 OD1 F:ASP313 2.2 48.4 1.0 O F:HOH505 2.3 63.9 1.0 CG D:ASP313 3.0 59.2 1.0 CG E:ASP313 3.0 49.9 1.0 OD2 D:ASP313 3.0 56.0 1.0 CG F:ASP313 3.2 64.8 1.0 OD2 E:ASP313 3.2 47.5 1.0 OD2 F:ASP313 3.4 65.8 1.0 HD22 E:LEU309 4.1 63.2 1.0 HD22 F:LEU309 4.3 72.4 1.0 HB3 E:LEU309 4.3 64.2 1.0 CB E:ASP313 4.4 51.4 1.0 O E:LEU309 4.4 48.9 1.0 CB D:ASP313 4.4 52.3 1.0 HB3 D:LEU309 4.4 67.4 1.0 H E:ASP313 4.5 57.8 1.0 HG22 F:THR312 4.5 62.2 1.0 HA E:ASP313 4.5 69.2 1.0 O D:LEU309 4.6 51.9 1.0 HA F:ASP313 4.6 64.0 1.0 HG22 E:THR312 4.6 78.6 1.0 O F:LEU309 4.6 46.6 1.0 CB F:ASP313 4.6 61.5 1.0 HA D:ASP313 4.6 69.6 1.0 HB3 F:LEU309 4.7 63.4 1.0 HB3 E:ASP313 4.8 61.7 1.0 H F:ASP313 4.8 50.3 1.0 N E:ASP313 4.8 48.2 1.0 HG D:LEU309 4.8 69.0 1.0 H D:ASP313 4.8 61.7 1.0 CA E:ASP313 4.8 57.6 1.0 HG21 F:THR312 4.9 62.2 1.0 HB3 D:ASP313 4.9 62.7 1.0 HB E:THR312 4.9 77.4 1.0 HB2 D:ASP313 4.9 62.7 1.0 CA D:ASP313 5.0 58.0 1.0 HB F:THR312 5.0 62.8 1.0 CA F:ASP313 5.0 53.3 1.0 HB2 E:ASP313 5.0 61.7 1.0

Magnesium binding site 5 out of 6 in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:72.4 occ:1.00 O D:HOH737 2.1 59.0 1.0 O D:HOH594 2.3 44.1 1.0 O D:HOH587 2.3 45.8 1.0 O D:HOH769 2.4 46.4 1.0 HA D:ASP243 3.9 41.8 1.0 O D:HOH631 3.9 43.4 1.0 O D:GLU241 4.3 32.6 1.0 OD1 D:ASP243 4.4 45.2 1.0 O D:VAL240 4.5 31.5 1.0 HA D:GLU241 4.5 40.6 1.0 O D:LEU242 4.6 26.4 1.0 CA D:ASP243 4.8 34.8 1.0 C D:GLU241 4.8 29.7 1.0 C D:LEU242 4.9 30.2 1.0

Magnesium binding site 6 out of 6 in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) He Viral Receptor Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg401 b:60.9 occ:1.00 O F:HOH756 1.9 45.2 1.0 O F:HOH807 2.0 62.5 1.0 O F:HOH805 2.2 41.7 1.0 O F:HOH570 2.2 36.4 1.0 O F:HOH504 2.4 39.6 1.0 HA F:ASP243 3.5 37.1 1.0 O F:HOH630 4.1 41.9 1.0 OD1 F:ASP243 4.1 49.7 1.0 O F:GLU241 4.3 27.4 1.0 O F:HOH669 4.3 48.9 1.0 O F:LEU242 4.4 25.0 1.0 CA F:ASP243 4.5 30.9 1.0 O F:VAL240 4.7 23.8 1.0 C F:LEU242 4.7 28.8 1.0 N F:ASP243 4.8 28.2 1.0 HA F:GLU241 4.8 33.9 1.0 C F:GLU241 4.9 24.3 1.0

J.D.Cook, A.Sultana, J.E.Lee. Structure of the Infectious Salmon Anemia Virus Receptor Complex Illustrates A Unique Binding Strategy For Attachment. Proc. Natl. Acad. Sci. V. 114 E2929 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28320973
DOI: 10.1073/PNAS.1617993114