Magnesium in PDB 5t9y: Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein

The structure of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein, PDB code: 5t9y was solved by J.D.Cook, A.Sultana, J.E.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.72 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	142.419, 93.289, 96.722, 90.00, 122.01, 90.00
R / Rfree (%)	13.7 / 16.8

The binding sites of Magnesium atom in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein (pdb code 5t9y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein, PDB code: 5t9y:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:42.5 occ:1.00 O B:HOH504 1.9 43.0 1.0 OD1 A:ASP313 2.1 48.7 1.0 OD1 B:ASP313 2.2 54.8 1.0 OD1 C:ASP313 2.2 56.8 1.0 O A:HOH503 2.2 42.2 1.0 O C:HOH502 2.3 42.5 1.0 CG B:ASP313 3.0 55.8 1.0 CG C:ASP313 3.1 57.4 1.0 CG A:ASP313 3.1 50.1 1.0 OD2 B:ASP313 3.2 55.5 1.0 OD2 C:ASP313 3.3 60.0 1.0 OD2 A:ASP313 3.4 53.2 1.0 HD22 A:LEU309 4.3 57.8 1.0 HA C:ASP313 4.4 70.1 1.0 O C:LEU309 4.5 64.1 1.0 CB B:ASP313 4.5 57.5 1.0 CB C:ASP313 4.5 56.3 1.0 HA A:ASP313 4.5 57.6 1.0 HA B:ASP313 4.5 69.2 1.0 CB A:ASP313 4.5 49.6 1.0 O A:LEU309 4.5 47.4 1.0 O B:LEU309 4.6 55.4 1.0 HD22 B:LEU309 4.6 63.0 1.0 HB3 B:LEU309 4.7 65.2 1.0 HD22 C:LEU309 4.7 0.0 1.0 H A:ASP313 4.7 56.2 1.0 HD12 C:ILE316 4.7 62.1 1.0 H C:ASP313 4.7 75.7 1.0 HB3 C:LEU309 4.8 0.6 1.0 HB3 A:LEU309 4.8 58.5 1.0 H B:ASP313 4.8 68.6 1.0 CA C:ASP313 4.8 58.4 1.0 CA A:ASP313 4.9 48.0 1.0 CA B:ASP313 4.9 57.7 1.0 HB A:THR312 4.9 53.3 1.0 HB3 B:ASP313 4.9 69.0 1.0 HB C:THR312 4.9 88.5 1.0 HB3 C:ASP313 4.9 67.5 1.0 N A:ASP313 4.9 46.8 1.0 N C:ASP313 5.0 63.1 1.0 HD12 B:ILE316 5.0 68.0 1.0 HB3 A:ASP313 5.0 59.5 1.0 HB2 B:ASP313 5.0 69.0 1.0 HB2 C:ASP313 5.0 67.5 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:58.9 occ:1.00 O A:HOH576 2.2 46.2 1.0 O A:HOH850 2.3 51.0 1.0 O A:HOH516 2.3 46.1 1.0 O A:HOH866 2.4 46.7 1.0 O A:HOH779 2.5 44.4 1.0 O A:HOH741 2.5 45.1 1.0 HA A:ASP243 3.7 33.8 1.0 O A:HOH665 4.0 45.6 1.0 O A:HOH542 4.2 53.2 1.0 OD1 A:ASP243 4.2 45.1 1.0 O A:VAL240 4.3 26.0 1.0 O A:GLU241 4.3 30.2 1.0 O A:LEU242 4.4 25.4 1.0 O A:HOH859 4.4 45.7 1.0 HA A:GLU241 4.5 32.2 1.0 CA A:ASP243 4.6 28.2 1.0 C A:GLU241 4.7 27.5 1.0 C A:LEU242 4.7 25.7 1.0 N A:ASP243 4.9 26.6 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Infectious Salmon Anemia Virus (Isav) Hemagglutinin-Esterase Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:40.6 occ:1.00 O B:HOH516 2.0 38.0 1.0 O B:HOH807 2.0 46.2 1.0 O B:HOH891 2.2 59.6 1.0 O B:HOH615 2.3 48.4 1.0 O B:HOH609 2.3 50.2 1.0 O B:HOH896 2.4 64.5 1.0 HA B:ASP243 3.4 30.9 1.0 OD1 B:ASP243 3.9 33.6 1.0 O B:HOH721 4.0 54.8 1.0 O B:GLU241 4.2 27.2 1.0 O B:LEU242 4.3 25.3 1.0 CA B:ASP243 4.3 25.7 1.0 O B:HOH633 4.4 33.5 1.0 O B:HOH586 4.4 45.4 1.0 O B:HOH908 4.4 65.7 1.0 C B:LEU242 4.6 25.4 1.0 O B:VAL240 4.6 27.2 1.0 N B:ASP243 4.6 25.0 1.0 HA B:GLU241 4.7 33.3 1.0 C B:GLU241 4.7 27.0 1.0 O B:HOH676 4.8 45.7 1.0 CG B:ASP243 4.9 32.2 1.0

J.D.Cook, A.Sultana, J.E.Lee. Structure of the Infectious Salmon Anemia Virus Receptor Complex Illustrates A Unique Binding Strategy For Attachment. Proc. Natl. Acad. Sci. V. 114 E2929 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28320973
DOI: 10.1073/PNAS.1617993114