Magnesium in PDB 5td3: Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis

Enzymatic activity of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis

All present enzymatic activity of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis:
1.13.11.1;

Protein crystallography data

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis, PDB code: 5td3 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.51 / 1.75
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 169.410, 55.860, 85.690, 90.00, 116.30, 90.00
R / Rfree (%) 17.7 / 21

Other elements in 5td3:

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis (pdb code 5td3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis, PDB code: 5td3:

Magnesium binding site 1 out of 1 in 5td3

Go back to Magnesium Binding Sites List in 5td3
Magnesium binding site 1 out of 1 in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:31.3
occ:1.00
 O A:HOH785 2.0 31.7 1.0
O A:HOH706 2.1 34.8 1.0
O A:HOH862 2.2 33.2 1.0
O A:HOH866 3.9 46.3 1.0
O A:HOH836 4.1 41.4 1.0
O A:HOH581 4.2 25.0 1.0
O A:GLY110 4.2 32.0 1.0
O A:HOH672 4.3 26.6 1.0
O A:HOH837 4.5 35.0 1.0
O A:HOH869 4.7 31.5 1.0
O A:HOH773 4.8 46.3 1.0

Reference:

D.G.Conrady, D.M.Dranow, D.Lorimer, T.E.Edwards. Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis To Be Published.
Page generated: Mon Dec 14 21:11:42 2020

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