Magnesium in PDB 5thk: Crystal Structure of A Putative Dehydrogenase From Burkholderia Cenocepacia with Bound Nadp

The structure of Crystal Structure of A Putative Dehydrogenase From Burkholderia Cenocepacia with Bound Nadp, PDB code: 5thk was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.19 / 1.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	75.540, 102.440, 122.250, 90.00, 97.28, 90.00
R / Rfree (%)	14 / 16.4

The binding sites of Magnesium atom in the Crystal Structure of A Putative Dehydrogenase From Burkholderia Cenocepacia with Bound Nadp (pdb code 5thk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Putative Dehydrogenase From Burkholderia Cenocepacia with Bound Nadp, PDB code: 5thk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Putative Dehydrogenase From Burkholderia Cenocepacia with Bound Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative Dehydrogenase From Burkholderia Cenocepacia with Bound Nadp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg302 b:14.1 occ:1.00 O C:GLY30 2.2 12.0 1.0 OH2 C:1PE303 2.3 12.2 0.4 OH2 C:1PE303 2.4 10.8 0.6 OH5 C:1PE303 2.5 7.5 0.6 OH4 C:1PE303 2.6 13.9 0.6 OH3 C:1PE303 2.6 13.9 0.6 OH3 C:1PE303 2.6 13.1 0.4 OH5 C:1PE303 2.7 21.9 0.4 OH7 C:1PE303 2.9 26.1 0.6 OH4 C:1PE303 2.9 14.7 0.4 OH6 C:1PE303 3.2 24.6 0.6 C13 C:1PE303 3.2 13.7 0.4 C14 C:1PE303 3.3 9.2 0.6 C12 C:1PE303 3.3 12.9 0.4 C23 C:1PE303 3.3 15.1 0.4 C12 C:1PE303 3.3 13.6 0.6 C24 C:1PE303 3.4 11.4 0.6 C14 C:1PE303 3.4 21.1 0.4 C22 C:1PE303 3.4 12.8 0.4 C25 C:1PE303 3.5 15.1 0.6 C C:GLY30 3.5 11.0 1.0 C24 C:1PE303 3.5 15.9 0.4 C22 C:1PE303 3.5 13.9 0.6 C13 C:1PE303 3.5 12.5 0.6 C23 C:1PE303 3.5 13.4 0.6 C15 C:1PE303 3.6 18.8 0.6 C26 C:1PE303 3.6 25.3 0.6 C25 C:1PE303 3.6 23.1 0.4 C16 C:1PE303 3.8 24.3 0.6 C15 C:1PE303 4.0 23.6 0.4 CA C:HIS31 4.1 11.1 1.0 N C:HIS31 4.2 11.6 1.0 C C:HIS31 4.5 10.9 1.0 CA C:GLY30 4.5 11.2 1.0 OH6 C:1PE303 4.7 21.5 0.4 N C:GLY32 4.7 11.1 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Putative Dehydrogenase From Burkholderia Cenocepacia with Bound Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Putative Dehydrogenase From Burkholderia Cenocepacia with Bound Nadp within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg302 b:13.4 occ:1.00 O G:HOH470 3.0 17.4 1.0 O G:HOH641 3.2 50.3 1.0 NZ G:LYS18 3.2 13.4 1.0 ND2 G:ASN19 3.3 9.3 1.0 CE G:LYS18 3.8 11.3 1.0 CD G:LYS18 3.8 11.3 1.0 CB G:PRO195 3.9 9.8 1.0 CG G:PRO195 4.2 11.0 1.0 CG G:ASN19 4.4 8.5 1.0 O G:HOH437 4.4 23.7 1.0 OD1 G:ASN19 4.6 11.7 1.0 O G:HOH404 4.7 36.8 1.0 O2A G:NAP301 4.7 9.9 1.0 CD G:PRO195 4.8 10.9 1.0 O1A G:NAP301 4.9 10.2 1.0 CG G:LYS18 5.0 11.2 1.0

D.M.Dranow, S.J.Mayclin, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Putative Dehydrogenase From Burkholderia Cenocepacia with Bound Nadp To Be Published.