Atomistry » Magnesium » PDB 5tfc-5tuq » 5tis
Atomistry »
  Magnesium »
    PDB 5tfc-5tuq »
      5tis »

Magnesium in PDB 5tis: Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex

Enzymatic activity of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex

All present enzymatic activity of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex:
1.10.3.9;

Protein crystallography data

The structure of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex, PDB code: 5tis was solved by I.D.Young, M.Ibrahim, R.Chatterjee, S.Gul, F.Fuller, S.Koroidov, A.S.Brewster, R.Tran, R.Alonso-Mori, T.Kroll, T.Michels-Clark, H.Laksmono, R.G.Sierra, C.A.Stan, R.Hussein, M.Zhang, L.Douthit, M.Kubin, C.De Lichtenberg, L.V.Pham, H.Nilsson, M.H.Cheah, D.Shevela, C.Saracini, M.A.Bean, I.Seuffert, D.Sokaras, T.-C.Weng, E.Pastor, C.Weninger, T.Fransson, L.Lassalle, P.Braeuer, P.Aller, P.T.Docker, B.Andi, A.M.Orville, J.M.Glownia, S.Nelson, M.Sikorski, D.Zhu, M.S.Hunter, A.Aquila, J.E.Koglin, J.Robinson, M.Liang, S.Boutet, A.Y.Lyubimov, M.Uervirojnangkoorn, N.W.Moriarty, D.Liebschner, P.V.Afonine, D.G.Watermann, G.Evans, P.Wernet, H.Dobbek, W.I.Weis, A.T.Brunger, P.H.Zwart, P.D.Adams, A.Zouni, J.Messinger, U.Bergmann, N.K.Sauter, J.Kern, V.K.Yachandra, J.Yano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.28 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 117.870, 223.140, 310.710, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 23.1

Other elements in 5tis:

The structure of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex also contains other interesting chemical elements:

Manganese (Mn) 8 atoms
Iron (Fe) 6 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70;

Binding sites:

The binding sites of Magnesium atom in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex (pdb code 5tis). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 70 binding sites of Magnesium where determined in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex, PDB code: 5tis:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 1 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg606

b:32.2
occ:1.00
MG A:CLA606 0.0 32.2 1.0
ND A:CLA606 2.0 30.6 1.0
NB A:CLA606 2.1 34.0 1.0
NC A:CLA606 2.1 27.4 1.0
NA A:CLA606 2.1 32.2 1.0
NE2 A:HIS198 2.2 36.6 1.0
C4D A:CLA606 2.9 27.4 1.0
C4A A:CLA606 3.1 35.9 1.0
C1B A:CLA606 3.1 34.4 1.0
C1C A:CLA606 3.1 29.5 1.0
CE1 A:HIS198 3.1 33.2 1.0
C4B A:CLA606 3.1 31.3 1.0
C4C A:CLA606 3.1 28.6 1.0
C1A A:CLA606 3.1 30.4 1.0
C1D A:CLA606 3.2 31.2 1.0
CD2 A:HIS198 3.3 32.6 1.0
CHB A:CLA606 3.4 31.5 1.0
CHC A:CLA606 3.4 31.3 1.0
CHA A:CLA606 3.5 31.0 1.0
CHD A:CLA606 3.5 30.9 1.0
CE A:MET183 4.0 25.0 1.0
ND1 A:HIS198 4.3 25.3 1.0
C3D A:CLA606 4.3 23.4 1.0
C2C A:CLA606 4.3 35.9 1.0
CAB D:CLA402 4.3 32.0 1.0
C2B A:CLA606 4.3 32.2 1.0
C3C A:CLA606 4.4 29.3 1.0
C3B A:CLA606 4.4 31.5 1.0
C2D A:CLA606 4.4 27.3 1.0
C3A A:CLA606 4.4 37.1 1.0
CG A:HIS198 4.4 35.4 1.0
C2A A:CLA606 4.4 29.2 1.0
CBB D:CLA402 4.9 31.1 1.0
CBD A:CLA606 4.9 34.5 1.0

Magnesium binding site 2 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 2 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg607

b:33.7
occ:1.00
MG A:CLA607 0.0 33.7 1.0
NB A:CLA607 2.0 33.1 1.0
ND A:CLA607 2.0 36.5 1.0
NC A:CLA607 2.1 32.1 1.0
NA A:CLA607 2.1 34.8 1.0
O A:HOH743 2.1 27.3 1.0
C4D A:CLA607 2.9 30.5 1.0
C1B A:CLA607 3.0 32.2 1.0
C4A A:CLA607 3.1 33.9 1.0
C1C A:CLA607 3.1 35.5 1.0
C4B A:CLA607 3.1 35.1 1.0
C4C A:CLA607 3.1 34.6 1.0
C1A A:CLA607 3.1 37.6 1.0
C1D A:CLA607 3.2 34.7 1.0
CHB A:CLA607 3.4 32.9 1.0
CHC A:CLA607 3.4 33.1 1.0
CHA A:CLA607 3.5 35.5 1.0
CHD A:CLA607 3.5 29.2 1.0
CBB A:PHO608 4.0 36.1 1.0
C3D A:CLA607 4.3 33.2 1.0
C2B A:CLA607 4.3 35.0 1.0
C2C A:CLA607 4.3 35.9 1.0
C3B A:CLA607 4.3 34.0 1.0
O D:HOH562 4.3 36.6 1.0
C3C A:CLA607 4.4 30.9 1.0
C2D A:CLA607 4.4 33.4 1.0
C3A A:CLA607 4.4 36.6 1.0
C2A A:CLA607 4.4 32.5 1.0
CBA A:CLA607 4.7 35.3 1.0
CE2 A:PHE206 4.8 29.6 1.0
CG2 D:ILE178 4.9 35.0 1.0
CBD A:CLA607 4.9 33.1 1.0

Magnesium binding site 3 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 3 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg609

b:30.5
occ:1.00
MG A:CLA609 0.0 30.5 1.0
ND A:CLA609 2.0 28.0 1.0
NB A:CLA609 2.0 30.1 1.0
NC A:CLA609 2.1 29.4 1.0
NA A:CLA609 2.1 32.4 1.0
NE2 A:HIS118 2.2 33.4 1.0
C4D A:CLA609 2.9 26.6 1.0
CE1 A:HIS118 3.0 27.7 1.0
C4A A:CLA609 3.0 31.4 1.0
C1B A:CLA609 3.0 31.1 1.0
C1C A:CLA609 3.1 31.5 1.0
C4B A:CLA609 3.1 28.3 1.0
C4C A:CLA609 3.1 34.7 1.0
C1A A:CLA609 3.1 30.6 1.0
C1D A:CLA609 3.2 25.7 1.0
CD2 A:HIS118 3.4 30.2 1.0
CHB A:CLA609 3.4 30.2 1.0
CHC A:CLA609 3.4 35.1 1.0
CHA A:CLA609 3.5 31.8 1.0
CHD A:CLA609 3.5 28.0 1.0
ND1 A:HIS118 4.2 27.3 1.0
CG1 I:VAL8 4.3 36.1 1.0
C3D A:CLA609 4.3 29.7 1.0
C2B A:CLA609 4.3 34.3 1.0
C2C A:CLA609 4.3 34.8 1.0
C3B A:CLA609 4.3 29.5 1.0
C3C A:CLA609 4.4 33.0 1.0
C2D A:CLA609 4.4 32.4 1.0
C3A A:CLA609 4.4 31.6 1.0
CG A:HIS118 4.4 34.2 1.0
C2A A:CLA609 4.4 32.5 1.0
CG2 I:VAL12 4.4 33.8 1.0
CBD A:CLA609 4.9 29.3 1.0
CBA A:CLA609 4.9 39.5 1.0

Magnesium binding site 4 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 4 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg613

b:33.0
occ:1.00
MG A:CLA613 0.0 33.0 1.0
ND A:CLA613 2.0 36.6 1.0
NB A:CLA613 2.0 32.0 1.0
NC A:CLA613 2.1 34.6 1.0
NA A:CLA613 2.1 32.4 1.0
O A:HOH732 2.2 29.8 1.0
C4D A:CLA613 2.9 29.9 1.0
C1B A:CLA613 3.0 32.9 1.0
C4A A:CLA613 3.0 32.1 1.0
C1C A:CLA613 3.1 35.6 1.0
C4B A:CLA613 3.1 33.2 1.0
C4C A:CLA613 3.1 32.3 1.0
C1A A:CLA613 3.1 34.6 1.0
C1D A:CLA613 3.2 38.3 1.0
CHB A:CLA613 3.4 28.2 1.0
CHC A:CLA613 3.4 34.5 1.0
CHA A:CLA613 3.5 29.5 1.0
CHD A:CLA613 3.5 38.7 1.0
CBB D:PHO401 4.0 35.9 1.0
C3D A:CLA613 4.3 30.1 1.0
C2B A:CLA613 4.3 29.7 1.0
C2C A:CLA613 4.3 42.5 1.0
O A:HOH767 4.3 31.9 1.0
C3B A:CLA613 4.3 38.2 1.0
C3C A:CLA613 4.3 39.3 1.0
C2D A:CLA613 4.4 34.9 1.0
C3A A:CLA613 4.4 30.7 1.0
C2A A:CLA613 4.4 32.1 1.0
CBA A:CLA613 4.6 32.4 1.0
CG2 A:THR179 4.7 33.4 1.0
CBD A:CLA613 4.9 31.1 1.0
OG1 A:THR179 5.0 25.7 1.0

Magnesium binding site 5 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 5 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:41.7
occ:1.00
MG B:CLA601 0.0 41.7 1.0
ND B:CLA601 2.0 50.4 1.0
NB B:CLA601 2.0 45.0 1.0
NC B:CLA601 2.1 49.6 1.0
NA B:CLA601 2.1 48.3 1.0
O B:HOH733 2.1 41.8 1.0
C4D B:CLA601 2.9 54.2 1.0
C1B B:CLA601 3.0 40.7 1.0
C4A B:CLA601 3.0 46.7 1.0
C1C B:CLA601 3.1 43.8 1.0
C4B B:CLA601 3.1 46.3 1.0
C4C B:CLA601 3.1 46.1 1.0
C1A B:CLA601 3.1 50.9 1.0
C1D B:CLA601 3.2 53.5 1.0
CHB B:CLA601 3.4 44.5 1.0
CHC B:CLA601 3.4 43.2 1.0
CHA B:CLA601 3.5 49.8 1.0
CHD B:CLA601 3.5 49.5 1.0
C8 B:CLA601 3.9 64.4 1.0
C3D B:CLA601 4.3 54.6 1.0
C2B B:CLA601 4.3 40.4 1.0
C2C B:CLA601 4.3 45.1 1.0
C3B B:CLA601 4.3 39.5 1.0
C3C B:CLA601 4.4 50.3 1.0
C2D B:CLA601 4.4 57.0 1.0
C11 B:CLA601 4.4 70.1 1.0
O B:TRP185 4.4 47.6 1.0
C3A B:CLA601 4.4 53.2 1.0
C7 B:CLA601 4.4 60.3 1.0
C2A B:CLA601 4.5 53.8 1.0
CBB B:CLA602 4.7 42.0 1.0
CE2 B:PHE190 4.7 41.0 1.0
C9 B:CLA601 4.7 65.8 1.0
C10 B:CLA601 4.7 72.8 1.0
CBD B:CLA601 4.9 60.0 1.0

Magnesium binding site 6 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 6 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:38.6
occ:1.00
MG B:CLA602 0.0 38.6 1.0
ND B:CLA602 2.0 35.2 1.0
NB B:CLA602 2.0 35.8 1.0
NC B:CLA602 2.1 34.8 1.0
NA B:CLA602 2.1 38.1 1.0
ND1 B:HIS201 2.2 40.9 1.0
CE1 B:HIS201 2.8 41.6 1.0
C4D B:CLA602 2.9 36.6 1.0
C1B B:CLA602 3.0 30.8 1.0
C4A B:CLA602 3.0 33.3 1.0
C1C B:CLA602 3.1 37.8 1.0
C4B B:CLA602 3.1 36.8 1.0
C4C B:CLA602 3.1 34.7 1.0
C1A B:CLA602 3.1 37.6 1.0
C1D B:CLA602 3.2 37.4 1.0
CHB B:CLA602 3.4 26.6 1.0
CG B:HIS201 3.4 37.7 1.0
CHC B:CLA602 3.4 33.3 1.0
CHA B:CLA602 3.5 36.4 1.0
CHD B:CLA602 3.5 39.5 1.0
CZ H:PHE41 3.9 50.0 1.0
NE2 B:HIS201 4.0 38.6 1.0
CB B:HIS201 4.0 34.2 1.0
C3D B:CLA602 4.3 33.4 1.0
C2B B:CLA602 4.3 31.3 1.0
C2C B:CLA602 4.3 34.1 1.0
C3B B:CLA602 4.3 35.5 1.0
C3C B:CLA602 4.4 32.8 1.0
CD2 B:HIS201 4.4 26.6 1.0
C2D B:CLA602 4.4 30.6 1.0
C3A B:CLA602 4.4 41.0 1.0
C2A B:CLA602 4.4 37.6 1.0
CE2 H:PHE41 4.6 49.8 1.0
CA B:HIS201 4.6 34.7 1.0
CE1 B:PHE190 4.8 42.3 1.0
CBD B:CLA602 4.9 32.6 1.0
CE1 H:PHE41 5.0 53.0 1.0

Magnesium binding site 7 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 7 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg603

b:38.9
occ:1.00
MG B:CLA603 0.0 38.9 1.0
ND B:CLA603 2.0 34.7 1.0
NB B:CLA603 2.0 31.2 1.0
NC B:CLA603 2.1 30.7 1.0
NA B:CLA603 2.1 35.4 1.0
NE2 B:HIS202 2.2 38.4 1.0
C4D B:CLA603 2.9 34.1 1.0
C1B B:CLA603 3.0 32.9 1.0
C4A B:CLA603 3.0 37.4 1.0
C1C B:CLA603 3.1 32.2 1.0
C4B B:CLA603 3.1 29.1 1.0
C4C B:CLA603 3.1 28.8 1.0
C1A B:CLA603 3.1 35.9 1.0
CE1 B:HIS202 3.2 33.7 1.0
C1D B:CLA603 3.2 35.4 1.0
CD2 B:HIS202 3.2 36.2 1.0
CHB B:CLA603 3.4 31.5 1.0
CHC B:CLA603 3.4 30.6 1.0
CHA B:CLA603 3.5 33.0 1.0
CHD B:CLA603 3.5 40.1 1.0
C6 B:CLA605 4.1 41.1 1.0
C9 B:CLA605 4.3 44.6 1.0
ND1 B:HIS202 4.3 28.3 1.0
C3D B:CLA603 4.3 34.9 1.0
CG B:HIS202 4.3 41.1 1.0
C2B B:CLA603 4.3 34.7 1.0
C3B B:CLA603 4.3 31.0 1.0
C2C B:CLA603 4.3 25.4 1.0
C3C B:CLA603 4.4 31.1 1.0
C2D B:CLA603 4.4 39.3 1.0
C3A B:CLA603 4.4 36.4 1.0
C2A B:CLA603 4.4 36.0 1.0
C4 B:CLA605 4.8 42.3 1.0
CBA B:CLA603 4.9 31.3 1.0
C7 B:CLA605 4.9 42.7 1.0
CBD B:CLA603 4.9 39.8 1.0

Magnesium binding site 8 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 8 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg604

b:32.9
occ:1.00
MG B:CLA604 0.0 32.9 1.0
ND B:CLA604 2.0 28.4 1.0
NB B:CLA604 2.0 29.2 1.0
NC B:CLA604 2.1 31.0 1.0
NA B:CLA604 2.1 27.7 1.0
NE2 B:HIS455 2.2 33.1 1.0
C4D B:CLA604 2.9 31.5 1.0
C1B B:CLA604 3.0 31.4 1.0
C4A B:CLA604 3.1 33.7 1.0
C1C B:CLA604 3.1 31.7 1.0
C4B B:CLA604 3.1 32.1 1.0
C4C B:CLA604 3.1 29.9 1.0
CE1 B:HIS455 3.1 34.6 1.0
C1D B:CLA604 3.2 33.9 1.0
C1A B:CLA604 3.2 31.8 1.0
CD2 B:HIS455 3.2 31.2 1.0
CHB B:CLA604 3.4 29.5 1.0
CHC B:CLA604 3.5 35.3 1.0
CHA B:CLA604 3.5 33.6 1.0
CHD B:CLA604 3.5 32.1 1.0
C14 B:CLA612 3.8 36.8 1.0
ND1 B:HIS455 4.3 25.6 1.0
C3D B:CLA604 4.3 34.0 1.0
CG B:HIS455 4.3 30.3 1.0
C2B B:CLA604 4.3 28.6 1.0
C2C B:CLA604 4.3 35.1 1.0
C3B B:CLA604 4.3 32.3 1.0
C3C B:CLA604 4.4 30.7 1.0
C2D B:CLA604 4.4 33.9 1.0
C3A B:CLA604 4.4 31.5 1.0
C2A B:CLA604 4.5 31.0 1.0
C15 B:CLA612 4.6 37.4 1.0
C13 B:CLA612 4.7 41.1 1.0
CBD B:CLA604 5.0 31.8 1.0

Magnesium binding site 9 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 9 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg605

b:34.5
occ:1.00
MG B:CLA605 0.0 34.5 1.0
ND B:CLA605 2.0 32.5 1.0
NB B:CLA605 2.0 32.5 1.0
NC B:CLA605 2.1 35.2 1.0
NA B:CLA605 2.1 32.0 1.0
NE2 B:HIS100 2.2 31.1 1.0
C4D B:CLA605 2.9 27.2 1.0
C1B B:CLA605 3.0 29.2 1.0
C4A B:CLA605 3.0 31.1 1.0
CE1 B:HIS100 3.1 38.2 1.0
C1C B:CLA605 3.1 33.8 1.0
C4B B:CLA605 3.1 30.8 1.0
C4C B:CLA605 3.1 35.8 1.0
C1A B:CLA605 3.1 30.6 1.0
C1D B:CLA605 3.2 26.6 1.0
CD2 B:HIS100 3.3 36.2 1.0
CHB B:CLA605 3.4 31.3 1.0
CHC B:CLA605 3.4 38.5 1.0
CHA B:CLA605 3.5 33.6 1.0
CHD B:CLA605 3.5 33.5 1.0
ND1 B:HIS100 4.2 31.7 1.0
C3D B:CLA605 4.3 29.9 1.0
C2B B:CLA605 4.3 34.7 1.0
C2C B:CLA605 4.3 36.8 1.0
C3B B:CLA605 4.3 32.5 1.0
C3C B:CLA605 4.4 35.4 1.0
C2D B:CLA605 4.4 30.3 1.0
CG B:HIS100 4.4 33.3 1.0
C3A B:CLA605 4.4 26.1 1.0
C2A B:CLA605 4.4 31.9 1.0
C2 B:CLA604 4.5 43.6 1.0
CBA B:CLA605 4.9 29.7 1.0
CBD B:CLA605 4.9 30.5 1.0
O1A B:CLA604 5.0 33.9 1.0
O2A B:CLA604 5.0 40.6 1.0

Magnesium binding site 10 out of 70 in 5tis

Go back to Magnesium Binding Sites List in 5tis
Magnesium binding site 10 out of 70 in the Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Room Temperature Xfel Structure of the Native, Doubly-Illuminated Photosystem II Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg606

b:36.6
occ:1.00
MG B:CLA606 0.0 36.6 1.0
ND B:CLA606 2.0 34.7 1.0
NB B:CLA606 2.1 35.4 1.0
NC B:CLA606 2.1 36.6 1.0
NA B:CLA606 2.1 31.6 1.0
ND1 B:HIS157 2.2 39.6 1.0
CE1 B:HIS157 2.5 40.3 1.0
C4D B:CLA606 2.9 36.4 1.0
C1B B:CLA606 3.1 33.0 1.0
C4A B:CLA606 3.1 35.2 1.0
C1C B:CLA606 3.1 33.0 1.0
C4B B:CLA606 3.1 38.1 1.0
C4C B:CLA606 3.1 35.2 1.0
C1A B:CLA606 3.2 36.3 1.0
C1D B:CLA606 3.2 35.8 1.0
CHB B:CLA606 3.4 36.9 1.0
CHC B:CLA606 3.4 32.9 1.0
CHA B:CLA606 3.5 36.5 1.0
CG B:HIS157 3.5 31.8 1.0
CHD B:CLA606 3.5 33.7 1.0
C8 B:UNL622 3.6 41.9 1.0
NE2 B:HIS157 3.8 35.8 1.0
C9 B:UNL622 3.9 42.8 1.0
C3D B:CLA606 4.3 46.0 1.0
CB B:HIS157 4.3 32.8 1.0
CD2 B:HIS157 4.3 31.4 1.0
C2C B:CLA606 4.3 38.4 1.0
C2B B:CLA606 4.3 35.6 1.0
C3C B:CLA606 4.3 41.7 1.0
C3B B:CLA606 4.3 30.2 1.0
C2D B:CLA606 4.4 38.1 1.0
C3A B:CLA606 4.4 34.4 1.0
C7 B:UNL622 4.4 55.0 1.0
C2A B:CLA606 4.5 32.0 1.0
C6 B:UNL622 4.6 43.9 1.0
CBD B:CLA606 4.9 37.0 1.0

Reference:

I.D.Young, M.Ibrahim, R.Chatterjee, S.Gul, F.D.Fuller, S.Koroidov, A.S.Brewster, R.Tran, R.Alonso-Mori, T.Kroll, T.Michels-Clark, H.Laksmono, R.G.Sierra, C.A.Stan, R.Hussein, M.Zhang, L.Douthit, M.Kubin, C.De Lichtenberg, L.Vo Pham, H.Nilsson, M.H.Cheah, D.Shevela, C.Saracini, M.A.Bean, I.Seuffert, D.Sokaras, T.C.Weng, E.Pastor, C.Weninger, T.Fransson, L.Lassalle, P.Brauer, P.Aller, P.T.Docker, B.Andi, A.M.Orville, J.M.Glownia, S.Nelson, M.Sikorski, D.Zhu, M.S.Hunter, T.J.Lane, A.Aquila, J.E.Koglin, J.Robinson, M.Liang, S.Boutet, A.Y.Lyubimov, M.Uervirojnangkoorn, N.W.Moriarty, D.Liebschner, P.V.Afonine, D.G.Waterman, G.Evans, P.Wernet, H.Dobbek, W.I.Weis, A.T.Brunger, P.H.Zwart, P.D.Adams, A.Zouni, J.Messinger, U.Bergmann, N.K.Sauter, J.Kern, V.K.Yachandra, J.Yano. Structure of Photosystem II and Substrate Binding at Room Temperature. Nature V. 540 453 2016.
ISSN: ESSN 1476-4687
PubMed: 27871088
DOI: 10.1038/NATURE20161
Page generated: Mon Sep 30 04:52:01 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy