Magnesium in PDB 5tpy: Crystal Structure of An Exonuclease Resistant Rna From Zika Virus

The structure of Crystal Structure of An Exonuclease Resistant Rna From Zika Virus, PDB code: 5tpy was solved by B.M.Akiyama, H.M.Laurence, A.R.Massey, D.A.Costantino, X.Xie, Y.Yang, P.-Y.Shi, J.C.Nix, J.D.Beckham, J.S.Kieft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.84 / 2.81
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	111.679, 111.679, 90.826, 90.00, 90.00, 120.00
R / Rfree (%)	19.1 / 21.8

The binding sites of Magnesium atom in the Crystal Structure of An Exonuclease Resistant Rna From Zika Virus (pdb code 5tpy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of An Exonuclease Resistant Rna From Zika Virus, PDB code: 5tpy:

Magnesium binding site 1 out of 1 in the Crystal Structure of An Exonuclease Resistant Rna From Zika Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Exonuclease Resistant Rna From Zika Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:32.4 occ:1.00 OP2 A:C23 2.1 53.2 1.0 OP2 A:C5 2.4 46.7 1.0 OP2 A:A6 2.5 47.7 1.0 P A:C23 3.5 46.5 1.0 P A:C5 3.8 51.2 1.0 P A:A6 3.9 47.5 1.0 OP1 A:C23 4.1 44.9 1.0 O3' A:C22 4.4 48.6 1.0 N7 A:A6 4.5 49.5 1.0 OP1 A:C5 4.5 46.0 1.0 O5' A:C23 4.5 48.3 1.0 O5' A:A6 4.6 43.7 1.0 O5' A:C5 4.7 47.8 1.0 C8 A:A6 4.7 48.1 1.0 OP1 A:A6 4.8 46.0 1.0 C4' A:U4 4.8 42.6 1.0 O3' A:U4 4.8 46.2 1.0 O3' A:C5 4.8 46.9 1.0 C3' A:C5 4.9 43.3 1.0 C5' A:C23 4.9 44.5 1.0 C5' A:U4 4.9 42.9 1.0

B.M.Akiyama, H.M.Laurence, A.R.Massey, D.A.Costantino, X.Xie, Y.Yang, P.Y.Shi, J.C.Nix, J.D.Beckham, J.S.Kieft. Zika Virus Produces Noncoding Rnas Using A Multi-Pseudoknot Structure That Confounds A Cellular Exonuclease. Science V. 354 1148 2016.
ISSN: ESSN 1095-9203
PubMed: 27934765
DOI: 10.1126/SCIENCE.AAH3963