Magnesium in PDB 5tr9: Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad

Protein crystallography data

The structure of Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad, PDB code: 5tr9 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.06 / 1.65
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 163.010, 163.010, 163.010, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 16.3

Other elements in 5tr9:

The structure of Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad also contains other interesting chemical elements:

Chlorine (Cl) 28 atoms
Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad (pdb code 5tr9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad, PDB code: 5tr9:

Magnesium binding site 1 out of 1 in 5tr9

Go back to Magnesium Binding Sites List in 5tr9
Magnesium binding site 1 out of 1 in the Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg320

b:14.3
occ:0.49
OE1 A:GLU72 2.1 18.8 0.5
OE1 A:GLU72 2.7 18.6 0.5
O A:HOH649 2.9 21.1 0.7
CD A:GLU72 3.1 14.8 0.5
OE2 A:GLU72 3.4 12.3 0.5
O A:HOH525 3.5 55.5 1.0
CD A:GLU72 3.8 15.8 0.5
OE2 A:GLU72 4.1 14.7 0.5
O A:HOH592 4.1 39.0 1.0
O A:HOH493 4.2 25.3 1.0
O A:HOH649 4.4 22.1 0.3
CG A:GLU72 4.4 14.5 0.5
NE2 A:GLN141 4.6 31.8 1.0
O A:HOH684 4.6 27.0 1.0

Reference:

S.J.Mayclin, D.Fox Iii, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Ferredoxin Nadp+ Reductase From Neisseria Gonorrhoeae with Bound Fad To Be Published.
Page generated: Mon Dec 14 21:12:50 2020

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