Magnesium in PDB 5u8p: Crystal Structure of A Short Chain Dehydrogenase From Burkholderia Cenocepacia J2315 in Complex with Nad

The structure of Crystal Structure of A Short Chain Dehydrogenase From Burkholderia Cenocepacia J2315 in Complex with Nad, PDB code: 5u8p was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.42 / 1.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	92.160, 103.080, 87.000, 90.00, 120.68, 90.00
R / Rfree (%)	11.7 / 13.7

The binding sites of Magnesium atom in the Crystal Structure of A Short Chain Dehydrogenase From Burkholderia Cenocepacia J2315 in Complex with Nad (pdb code 5u8p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Short Chain Dehydrogenase From Burkholderia Cenocepacia J2315 in Complex with Nad, PDB code: 5u8p:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Short Chain Dehydrogenase From Burkholderia Cenocepacia J2315 in Complex with Nad


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Short Chain Dehydrogenase From Burkholderia Cenocepacia J2315 in Complex with Nad within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:7.4 occ:1.00 OD2 A:ASP92 2.0 7.8 1.0 O A:HOH533 2.0 8.0 1.0 OE2 A:GLU118 2.1 8.3 1.0 O A:HOH550 2.1 8.9 1.0 OG A:SER93 2.1 7.1 1.0 O3B A:NAD400 2.2 7.3 1.0 CD A:GLU118 3.0 8.1 1.0 CG A:ASP92 3.0 7.8 1.0 C3B A:NAD400 3.2 6.8 1.0 CB A:SER93 3.2 6.7 1.0 OD1 A:ASP92 3.3 8.1 1.0 OE1 A:GLU118 3.7 8.1 1.0 CG A:GLU118 3.8 9.0 1.0 C2B A:NAD400 4.0 7.4 1.0 O2B A:NAD400 4.1 7.6 1.0 O A:GLY59 4.1 11.5 1.0 O2A A:NAD400 4.1 7.7 1.0 O1A A:NAD400 4.2 6.9 1.0 N A:SER93 4.3 7.1 1.0 CA A:SER93 4.3 6.3 1.0 CB A:ASP92 4.4 7.7 1.0 OD2 A:ASP121 4.4 8.8 1.0 CB A:GLU118 4.4 8.9 1.0 PA A:NAD400 4.4 6.5 1.0 C4B A:NAD400 4.5 6.9 1.0 O5B A:NAD400 4.5 6.7 1.0 O A:PRO58 4.7 8.8 1.0 C A:ASP92 4.8 7.0 1.0 CG A:PRO269 4.8 10.8 1.0 CB A:PRO58 4.8 9.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Short Chain Dehydrogenase From Burkholderia Cenocepacia J2315 in Complex with Nad


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Short Chain Dehydrogenase From Burkholderia Cenocepacia J2315 in Complex with Nad within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:7.8 occ:1.00 OD2 B:ASP92 2.0 7.5 1.0 O B:HOH525 2.1 7.8 1.0 OE2 B:GLU118 2.1 7.4 1.0 O B:HOH539 2.1 8.8 1.0 OG B:SER93 2.1 7.0 1.0 O3B B:NAD400 2.2 7.4 1.0 CD B:GLU118 3.0 8.7 1.0 CG B:ASP92 3.0 8.2 1.0 CB B:SER93 3.2 6.7 1.0 C3B B:NAD400 3.2 6.6 1.0 OD1 B:ASP92 3.3 8.4 1.0 OE1 B:GLU118 3.7 8.8 1.0 CG B:GLU118 3.9 8.9 1.0 C2B B:NAD400 4.0 7.5 1.0 O B:GLY59 4.1 11.5 1.0 O2B B:NAD400 4.1 8.1 1.0 O2A B:NAD400 4.1 7.5 1.0 O1A B:NAD400 4.1 7.0 1.0 N B:SER93 4.3 7.0 1.0 CA B:SER93 4.3 6.7 1.0 CB B:ASP92 4.4 7.5 1.0 OD2 B:ASP121 4.4 9.7 1.0 PA B:NAD400 4.4 6.7 1.0 CB B:GLU118 4.4 7.9 1.0 C4B B:NAD400 4.5 6.7 1.0 O5B B:NAD400 4.5 7.0 1.0 O B:PRO58 4.7 8.7 1.0 C B:ASP92 4.8 7.5 1.0 CB B:PRO58 4.9 9.8 1.0 CG B:PRO269 4.9 9.6 1.0

J.Abendroth, S.L.Delker, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Short Chain Dehydrogenase From Burkholderia Cenocepacia J2315 in Complex with Nad To Be Published.