Magnesium in PDB 5ufd: Crystal Structure of Variable Lymphocyte Receptor (Vlr) RBC36 (Apo)

The structure of Crystal Structure of Variable Lymphocyte Receptor (Vlr) RBC36 (Apo), PDB code: 5ufd was solved by B.C.Collins, R.J.Gunn, T.R.Mckitrick, B.R.Herrin, R.D.Cummings, M.D.Cooper, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.96 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.339, 78.895, 158.804, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 21.8

The binding sites of Magnesium atom in the Crystal Structure of Variable Lymphocyte Receptor (Vlr) RBC36 (Apo) (pdb code 5ufd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Variable Lymphocyte Receptor (Vlr) RBC36 (Apo), PDB code: 5ufd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Variable Lymphocyte Receptor (Vlr) RBC36 (Apo)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Variable Lymphocyte Receptor (Vlr) RBC36 (Apo) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:28.3 occ:1.00 O A:HOH468 2.1 28.1 1.0 O A:HOH571 2.2 27.0 1.0 O A:HOH448 2.2 30.5 1.0 O A:HOH578 2.3 32.0 1.0 O A:HIS16 4.4 21.4 1.0 ND1 A:HIS16 4.5 27.2 1.0 O A:HOH543 4.5 34.7 1.0 O A:HIS18 4.6 29.6 1.0 CA A:HIS16 4.9 22.1 1.0 O A:HIS19 4.9 37.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Variable Lymphocyte Receptor (Vlr) RBC36 (Apo)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Variable Lymphocyte Receptor (Vlr) RBC36 (Apo) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:21.1 occ:1.00 O B:HOH519 2.0 21.6 1.0 O B:HOH565 2.1 25.3 1.0 O B:HOH415 2.1 25.6 1.0 O B:HOH540 2.2 24.7 1.0 O B:HOH402 4.3 33.4 1.0 ND1 B:HIS16 4.4 21.4 1.0 O B:HIS18 4.4 25.3 1.0 ND1 B:HIS19 4.4 32.8 1.0 O B:HIS16 4.5 20.4 1.0 CA B:HIS16 4.8 17.0 1.0

B.C.Collins, R.J.Gunn, T.R.Mckitrick, R.D.Cummings, M.D.Cooper, B.R.Herrin, I.A.Wilson. Structural Insights Into Vlr Fine Specificity For Blood Group Carbohydrates. Structure V. 25 1667 2017.
ISSN: ISSN 1878-4186
PubMed: 28988747
DOI: 10.1016/J.STR.2017.09.003