Magnesium in PDB 5uie: VPS4-VTA1 Complex

Other elements in 5uie:

The structure of VPS4-VTA1 Complex also contains other interesting chemical elements:

Fluorine (F) 9 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the VPS4-VTA1 Complex (pdb code 5uie). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the VPS4-VTA1 Complex, PDB code: 5uie:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 5uie

Go back to Magnesium Binding Sites List in 5uie
Magnesium binding site 1 out of 3 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of VPS4-VTA1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:0.1
occ:1.00
F1 A:BEF502 2.0 0.1 1.0
O3B A:ADP501 3.1 0.1 1.0
OD2 A:ASP232 3.2 0.8 1.0
BE A:BEF502 3.2 0.1 1.0
F3 A:BEF502 3.2 0.1 1.0
OD1 A:ASP232 3.3 0.8 1.0
CB A:SER180 3.6 98.6 1.0
CG A:ASP232 3.6 0.8 1.0
F2 A:BEF502 4.3 0.1 1.0
O1B A:ADP501 4.3 0.1 1.0
OG A:SER180 4.4 98.6 1.0
PB A:ADP501 4.4 0.1 1.0
N A:SER180 4.4 98.6 1.0
OE2 A:GLU233 4.5 0.0 1.0
CA A:SER180 4.5 98.6 1.0
NH2 B:ARG289 4.8 95.4 1.0

Magnesium binding site 2 out of 3 in 5uie

Go back to Magnesium Binding Sites List in 5uie
Magnesium binding site 2 out of 3 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of VPS4-VTA1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:0.6
occ:1.00
F1 C:BEF501 2.0 0.6 1.0
O2B B:ADP501 3.1 0.6 1.0
OD2 B:ASP232 3.1 97.4 1.0
BE C:BEF501 3.2 0.6 1.0
OD1 B:ASP232 3.2 97.4 1.0
F3 C:BEF501 3.3 0.6 1.0
O3B B:ADP501 3.5 0.6 1.0
CG B:ASP232 3.5 97.4 1.0
CB B:SER180 3.6 88.7 1.0
PB B:ADP501 3.6 0.6 1.0
O1B B:ADP501 3.9 0.6 1.0
OG B:SER180 4.2 88.7 1.0
F2 C:BEF501 4.5 0.6 1.0
NH2 C:ARG289 4.5 80.3 1.0
CA B:SER180 4.6 88.7 1.0
N B:SER180 4.6 88.7 1.0
OE2 B:GLU233 4.8 0.4 1.0

Magnesium binding site 3 out of 3 in 5uie

Go back to Magnesium Binding Sites List in 5uie
Magnesium binding site 3 out of 3 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of VPS4-VTA1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg504

b:0.6
occ:1.00
F1 C:BEF503 2.0 0.6 1.0
O2B C:ADP502 3.1 0.6 1.0
OD1 C:ASP232 3.1 81.1 1.0
BE C:BEF503 3.2 0.6 1.0
OD2 C:ASP232 3.2 81.1 1.0
F3 C:BEF503 3.3 0.6 1.0
CG C:ASP232 3.6 81.1 1.0
NH2 D:ARG289 4.0 82.4 1.0
OE2 C:GLU233 4.1 90.2 1.0
O3B C:ADP502 4.3 0.6 1.0
CB C:SER180 4.3 83.4 1.0
F2 C:BEF503 4.3 0.6 1.0
PB C:ADP502 4.3 0.6 1.0
CG C:GLU233 4.5 90.2 1.0
CD C:GLU233 4.7 90.2 1.0
OG C:SER180 4.9 83.4 1.0

Reference:

N.Monroe, H.Han, P.S.Shen, W.I.Sundquist, C.P.Hill. Structural Basis of Protein Translocation By the VPS4-VTA1 Aaa Atpase. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28379137
DOI: 10.7554/ELIFE.24487
Page generated: Mon Dec 14 21:16:18 2020

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