Magnesium in PDB 5uj7: Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5

The structure of Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5, PDB code: 5uj7 was solved by A.Tocilj, E.Elkayam, K.F.On, L.Joshua-Tor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.88 / 3.39
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	120.887, 81.141, 151.947, 90.00, 97.25, 90.00
R / Rfree (%)	24.2 / 28.1

The structure of Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5 also contains other interesting chemical elements:

Potassium

(K)

2 atoms

The binding sites of Magnesium atom in the Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5 (pdb code 5uj7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5, PDB code: 5uj7:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:92.5 occ:1.00 O1B A:ATP900 2.0 96.2 1.0 OD2 A:ASP620 2.4 0.9 1.0 OD1 A:ASP620 2.4 0.1 1.0 CG A:ASP620 2.7 0.0 1.0 O3G A:ATP900 3.1 0.4 1.0 PB A:ATP900 3.2 99.6 1.0 O3B A:ATP900 3.3 99.2 1.0 OE2 A:GLU621 3.4 0.4 1.0 CB A:THR541 3.5 93.4 1.0 PG A:ATP900 3.8 0.1 1.0 CG2 A:THR541 3.9 97.0 1.0 CD A:GLU621 3.9 0.2 1.0 OG1 A:THR541 4.0 94.2 1.0 O3A A:ATP900 4.0 96.2 1.0 CG A:GLU621 4.0 0.9 1.0 CB A:ASP620 4.2 0.9 1.0 CG2 A:ILE652 4.2 97.4 1.0 NH2 C:ARG209 4.4 0.8 1.0 O2B A:ATP900 4.5 95.5 1.0 O2G A:ATP900 4.5 0.7 1.0 CA A:THR541 4.6 92.1 1.0 N A:THR541 4.6 86.6 1.0 CD1 A:ILE652 4.7 91.0 1.0 CB A:ILE652 4.9 95.2 1.0 OE1 A:GLU621 4.9 0.6 1.0

Magnesium binding site 2 out of 4 in the Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:45.0 occ:1.00 OG1 C:THR74 1.8 0.4 1.0 O3B C:ATP501 2.5 0.5 1.0 O3G C:ATP501 2.6 0.2 1.0 PG C:ATP501 2.9 0.4 1.0 O2A C:ATP501 3.0 0.6 1.0 O2G C:ATP501 3.1 0.6 1.0 NH2 E:ARG143 3.1 0.1 1.0 CB C:THR74 3.2 0.1 1.0 OD2 C:ASP159 3.6 88.8 1.0 OD1 C:ASP159 4.0 86.9 1.0 PB C:ATP501 4.0 0.6 1.0 CG2 C:THR74 4.0 0.4 1.0 N C:THR74 4.1 95.8 1.0 CA C:THR74 4.1 0.6 1.0 CZ E:ARG143 4.1 0.0 1.0 PA C:ATP501 4.2 0.0 1.0 CG C:ASP159 4.2 86.3 1.0 O3A C:ATP501 4.2 0.0 1.0 O1G C:ATP501 4.4 0.9 1.0 O2B C:ATP501 4.6 0.9 1.0 NH1 E:ARG143 4.6 0.6 1.0 CD1 C:LEU192 4.7 86.3 1.0 CB C:LYS73 4.9 82.6 1.0 O1A C:ATP501 4.9 0.7 1.0 O1B C:ATP501 5.0 0.1 1.0

Magnesium binding site 3 out of 4 in the Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg902 b:77.4 occ:1.00 O2G B:ATP901 2.3 88.9 1.0 OG1 B:THR541 2.4 0.2 1.0 O3B B:ATP901 2.5 89.4 1.0 OD2 B:ASP620 2.9 0.9 1.0 OD1 B:ASP620 2.9 0.1 1.0 PG B:ATP901 3.0 84.6 1.0 CG B:ASP620 3.3 0.6 1.0 CB B:THR541 3.5 0.4 1.0 OE2 B:GLU621 3.8 0.0 1.0 PB B:ATP901 3.8 84.8 1.0 O3G B:ATP901 3.9 82.6 1.0 O3A B:ATP901 4.0 84.9 1.0 NH2 D:ARG209 4.1 0.1 1.0 O1G B:ATP901 4.1 87.1 1.0 O2B B:ATP901 4.2 87.5 1.0 N B:THR541 4.4 0.2 1.0 CD B:GLU621 4.4 0.5 1.0 CG2 B:ILE652 4.5 0.9 1.0 CA B:THR541 4.5 0.4 1.0 CG2 B:THR541 4.5 0.2 1.0 CG B:GLU621 4.5 0.8 1.0 CB B:ASP620 4.8 0.6 1.0

Magnesium binding site 4 out of 4 in the Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the Active Form of Human Origin Recognition Complex Atpase Motor Module, Complex Subunits 1, 4, 5 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:66.5 occ:1.00 OG1 D:THR74 1.9 0.3 1.0 O3B D:ATP501 2.8 0.3 1.0 O3G D:ATP501 3.0 0.2 1.0 OD2 D:ASP159 3.1 0.1 1.0 NH2 F:ARG143 3.1 0.7 1.0 O2A D:ATP501 3.2 0.3 1.0 CB D:THR74 3.2 0.7 1.0 PG D:ATP501 3.4 0.9 1.0 O2G D:ATP501 3.6 0.8 1.0 OD1 D:ASP159 3.7 0.8 1.0 CG D:ASP159 3.8 0.8 1.0 CZ F:ARG143 3.9 0.4 1.0 CG2 D:THR74 3.9 0.8 1.0 NH1 F:ARG143 3.9 0.3 1.0 PB D:ATP501 4.2 0.8 1.0 CA D:THR74 4.3 0.5 1.0 PA D:ATP501 4.3 0.2 1.0 N D:THR74 4.4 0.6 1.0 O3A D:ATP501 4.4 0.3 1.0 O2B D:ATP501 4.8 0.8 1.0 O1G D:ATP501 4.8 0.2 1.0 CD1 D:LEU192 4.8 87.8 1.0 O1A D:ATP501 5.0 0.2 1.0

A.Tocilj, K.F.On, Z.Yuan, J.Sun, E.Elkayam, H.Li, B.Stillman, L.Joshua-Tor. Structure of the Active Form of Human Origin Recognition Complex and Its Atpase Motor Module. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28112645
DOI: 10.7554/ELIFE.20818