Magnesium in PDB 5une: Dimerized Structure Gives Further Insight Into the Function of the Novel Rna Gene: HAR1

Protein crystallography data

The structure of Dimerized Structure Gives Further Insight Into the Function of the Novel Rna Gene: HAR1, PDB code: 5une was solved by M.Lares, W.G.Scott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.03 / 2.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.562, 39.826, 80.974, 90.00, 111.83, 90.00
R / Rfree (%) 20.1 / 24.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Dimerized Structure Gives Further Insight Into the Function of the Novel Rna Gene: HAR1 (pdb code 5une). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Dimerized Structure Gives Further Insight Into the Function of the Novel Rna Gene: HAR1, PDB code: 5une:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5une

Go back to Magnesium Binding Sites List in 5une
Magnesium binding site 1 out of 2 in the Dimerized Structure Gives Further Insight Into the Function of the Novel Rna Gene: HAR1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dimerized Structure Gives Further Insight Into the Function of the Novel Rna Gene: HAR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg101

b:34.8
occ:1.00
O A:HOH103 3.8 21.6 1.0
O4' B:C33 4.1 19.3 1.0
C4' B:C33 4.5 18.0 1.0
O2' B:G32 4.5 21.6 1.0
C1' B:C33 4.7 18.9 1.0
N2 A:G13 4.9 22.9 1.0
O2' B:C33 5.0 22.6 1.0
O2 A:C14 5.0 20.5 1.0

Magnesium binding site 2 out of 2 in 5une

Go back to Magnesium Binding Sites List in 5une
Magnesium binding site 2 out of 2 in the Dimerized Structure Gives Further Insight Into the Function of the Novel Rna Gene: HAR1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Dimerized Structure Gives Further Insight Into the Function of the Novel Rna Gene: HAR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg102

b:15.7
occ:1.00
OP1 B:U10 4.0 34.4 1.0
OP2 B:U10 4.1 30.8 1.0
P B:U10 4.6 31.3 1.0
OP2 A:G31 4.6 10.4 1.0

Reference:

M.Lares, W.G.Scott, T.Kimberly. Dimerized Structure Gives Further Insight Into the Function of the Novel Rna Gene: HAR1 To Be Published.
Page generated: Mon Dec 14 21:16:35 2020

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