Magnesium in PDB 5utl: Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh)

The structure of Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh), PDB code: 5utl was solved by N.Schormann, G.C.Ulett, D.Chattopadhyay, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	86.87 / 1.92
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	67.826, 108.412, 90.440, 90.00, 106.15, 90.00
R / Rfree (%)	19.8 / 22

The binding sites of Magnesium atom in the Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) (pdb code 5utl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh), PDB code: 5utl:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:30.6 occ:1.00 O A:VAL27 2.3 30.1 1.0 O A:HOH602 2.3 35.6 1.0 O A:VAL24 2.3 28.6 1.0 O A:HOH635 2.3 24.1 1.0 O A:ILE21 2.4 25.1 1.0 C A:VAL24 3.5 29.3 1.0 C A:VAL27 3.5 30.7 1.0 C A:ILE21 3.5 24.9 1.0 CG2 A:ILE21 3.9 24.9 1.0 N A:VAL24 4.0 27.9 1.0 C A:GLN22 4.2 27.1 1.0 O A:GLN22 4.2 26.3 1.0 CA A:VAL24 4.2 28.3 1.0 CA A:GLN22 4.2 27.0 1.0 CA A:GLU28 4.3 32.2 1.0 N A:GLN22 4.3 25.9 1.0 N A:GLU28 4.4 31.6 1.0 CB A:GLU28 4.4 34.6 1.0 N A:VAL27 4.5 31.1 1.0 CB A:VAL24 4.5 28.0 1.0 N A:GLU25 4.5 30.6 1.0 CA A:VAL27 4.6 30.9 1.0 CA A:ILE21 4.6 24.5 1.0 O A:HOH597 4.7 26.0 1.0 N A:ASN23 4.7 27.2 1.0 CA A:GLU25 4.8 31.7 1.0 CB A:ILE21 4.9 24.4 1.0

Magnesium binding site 2 out of 4 in the Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:33.0 occ:1.00 O B:HOH608 2.3 30.7 1.0 O B:VAL27 2.3 35.9 1.0 O B:ILE21 2.4 29.5 1.0 O B:VAL24 2.4 33.6 1.0 O B:HOH609 2.6 38.3 1.0 C B:VAL24 3.5 35.4 1.0 C B:ILE21 3.6 29.2 1.0 C B:VAL27 3.6 37.4 1.0 CG2 B:ILE21 4.0 28.4 1.0 N B:VAL24 4.0 33.0 1.0 C B:GLN22 4.2 32.2 1.0 CA B:GLN22 4.2 31.5 1.0 CA B:VAL24 4.3 34.2 1.0 O B:GLN22 4.3 31.6 1.0 N B:GLN22 4.3 30.5 1.0 CA B:GLU28 4.4 35.5 1.0 N B:VAL27 4.4 41.3 1.0 N B:GLU28 4.4 35.6 1.0 N B:GLU25 4.4 37.7 1.0 CG1 B:VAL27 4.5 42.6 1.0 CA B:VAL27 4.6 39.5 1.0 CB B:GLU28 4.6 37.6 1.0 CA B:ILE21 4.6 28.1 1.0 CA B:GLU25 4.6 39.6 1.0 CB B:VAL24 4.6 33.9 1.0 O B:HOH562 4.7 27.4 1.0 N B:ASN23 4.8 32.5 1.0 CB B:ILE21 4.9 27.9 1.0 N B:GLY26 4.9 42.1 1.0

Magnesium binding site 3 out of 4 in the Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:35.9 occ:1.00 O C:VAL27 2.3 43.0 1.0 O C:VAL24 2.4 38.5 1.0 O C:ILE21 2.5 33.9 1.0 O C:HOH522 2.8 38.1 1.0 C C:VAL24 3.5 39.4 1.0 C C:VAL27 3.5 42.4 1.0 C C:ILE21 3.7 34.0 1.0 CG2 C:ILE21 4.0 33.2 1.0 N C:VAL24 4.1 36.9 1.0 CA C:GLU28 4.2 41.1 1.0 CA C:VAL24 4.3 38.0 1.0 N C:GLU28 4.3 41.5 1.0 CB C:GLU28 4.3 42.1 1.0 C C:GLN22 4.3 34.7 1.0 O C:GLN22 4.3 33.4 1.0 CA C:GLN22 4.4 34.5 1.0 O C:GLU25 4.4 42.9 1.0 N C:GLN22 4.5 33.6 1.0 N C:GLU25 4.5 42.0 1.0 N C:VAL27 4.5 44.9 1.0 CA C:VAL27 4.6 43.9 1.0 C C:GLU25 4.6 43.8 1.0 CA C:GLU25 4.7 44.3 1.0 CB C:VAL24 4.7 37.6 1.0 CA C:ILE21 4.7 32.7 1.0 CG2 C:VAL27 4.9 45.2 1.0 N C:ASN23 4.9 35.0 1.0 CB C:ILE21 5.0 32.8 1.0

Magnesium binding site 4 out of 4 in the Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Mutant Structures of Streptococcus Agalactiae Gbs Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:49.1 occ:1.00 O D:VAL27 2.2 51.9 1.0 O D:VAL24 2.2 50.4 1.0 O D:HOH598 2.4 44.3 1.0 O D:ILE21 2.5 39.2 1.0 C D:VAL24 3.3 50.6 1.0 C D:VAL27 3.5 52.6 1.0 C D:ILE21 3.6 38.2 1.0 CG2 D:ILE21 4.0 36.8 1.0 N D:VAL24 4.0 45.1 1.0 CA D:VAL24 4.2 47.7 1.0 O D:GLN22 4.2 40.0 1.0 C D:GLN22 4.3 40.6 1.0 N D:GLU25 4.3 54.5 1.0 CA D:GLU28 4.3 49.3 1.0 N D:GLU28 4.3 50.7 1.0 N D:VAL27 4.3 55.5 1.0 CA D:GLN22 4.4 40.2 1.0 N D:GLN22 4.4 38.7 1.0 CA D:VAL27 4.5 54.1 1.0 CG1 D:VAL27 4.5 56.0 1.0 CB D:GLU28 4.5 51.1 1.0 CA D:GLU25 4.5 56.3 1.0 CB D:VAL24 4.5 47.6 1.0 CA D:ILE21 4.7 36.6 1.0 N D:ASN23 4.8 41.0 1.0 N D:GLY26 4.9 55.8 1.0 C D:GLU25 4.9 55.8 1.0 CB D:ILE21 5.0 36.2 1.0

N.Schormann, G.C.Ulett, D.Chattopadhyay. Mutant Structures of Streptococcus Agalactiae Gapdh To Be Published.