Magnesium in PDB 5uyz: Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG

The structure of Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG, PDB code: 5uyz was solved by J.H.Pereira, R.P.Mcandrew, O.A.Sergeeva, C.Y.Ralston, J.A.King, P.D.Adams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	66.42 / 3.60
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	205.570, 205.570, 163.550, 90.00, 90.00, 90.00
R / Rfree (%)	27.5 / 32.4

The binding sites of Magnesium atom in the Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG (pdb code 5uyz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG, PDB code: 5uyz:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:0.4 occ:1.00 O2A A:ADP601 2.1 0.3 1.0 O2B A:ADP601 2.1 0.7 1.0 PA A:ADP601 2.9 0.6 1.0 O3A A:ADP601 3.0 0.4 1.0 PB A:ADP601 3.0 0.7 1.0 OD1 A:ASP73 3.3 0.1 1.0 O5' A:ADP601 3.5 95.9 1.0 O3B A:ADP601 3.5 0.2 1.0 OD2 A:ASP404 3.9 0.3 1.0 OD2 A:ASP104 3.9 0.7 1.0 OD1 A:ASP104 4.1 0.7 1.0 CG A:ASP73 4.3 0.1 1.0 O1B A:ADP601 4.4 86.2 1.0 O1A A:ADP601 4.4 0.1 1.0 CG A:ASP104 4.4 0.6 1.0 CB A:ASP73 4.5 0.5 1.0 CG A:ASP404 4.6 0.4 1.0 C5' A:ADP601 4.7 84.8 1.0 OD1 A:ASP404 4.8 0.7 1.0 CA A:ASP73 4.9 0.3 1.0

Magnesium binding site 2 out of 3 in the Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:1.0 occ:1.00 O2B B:ADP601 2.1 0.2 1.0 O2A B:ADP601 2.6 0.9 1.0 OD2 B:ASP104 3.0 0.0 1.0 O5' B:ADP601 3.2 0.1 1.0 PA B:ADP601 3.4 0.5 1.0 PB B:ADP601 3.5 0.3 1.0 O3A B:ADP601 3.8 0.3 1.0 CG B:ASP104 4.0 0.1 1.0 OD1 B:ASP104 4.3 0.8 1.0 C5' B:ADP601 4.4 0.1 1.0 O1B B:ADP601 4.4 0.9 1.0 O3B B:ADP601 4.5 0.0 1.0 OD1 B:ASP73 4.8 0.9 1.0 O1A B:ADP601 4.8 0.1 1.0 CA B:GLY105 4.9 98.9 1.0 OD2 B:ASP404 5.0 95.6 1.0

Magnesium binding site 3 out of 3 in the Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Human T-Complex Protein 1 Subunit Epsilon (CCT5) Mutant HIS147ARG within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:0.9 occ:1.00 O3B C:ADP601 2.2 0.3 1.0 O5' C:ADP601 2.9 97.0 1.0 O1A C:ADP601 3.0 0.9 1.0 PA C:ADP601 3.4 0.9 1.0 OD2 C:ASP104 3.5 0.8 1.0 PB C:ADP601 3.6 91.9 1.0 O3A C:ADP601 3.8 100.0 1.0 C5' C:ADP601 4.1 94.6 1.0 O2B C:ADP601 4.5 75.8 1.0 O1B C:ADP601 4.5 89.1 1.0 C3' C:ADP601 4.7 91.2 1.0 CG C:ASP104 4.7 0.3 1.0 C4' C:ADP601 4.7 97.4 1.0 O4' C:ADP601 4.8 94.3 1.0 C8 C:ADP601 4.8 97.9 1.0 O2A C:ADP601 4.9 0.2 1.0

J.H.Pereira, R.P.Mcandrew, O.A.Sergeeva, C.Y.Ralston, J.A.King, P.D.Adams. Structure of the Human Tric/Cct Subunit 5 Associated with Hereditary Sensory Neuropathy. Sci Rep V. 7 3673 2017.
ISSN: ESSN 2045-2322
PubMed: 28623285
DOI: 10.1038/S41598-017-03825-3