Magnesium in PDB 5v0r: Crystal Structure of Ubiquitin-Conjugating Enzyme From Naegleria Fowleri with Modified CYS99

Protein crystallography data

The structure of Crystal Structure of Ubiquitin-Conjugating Enzyme From Naegleria Fowleri with Modified CYS99, PDB code: 5v0r was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.62 / 1.55
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 52.360, 85.240, 33.850, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 19.1

Other elements in 5v0r:

The structure of Crystal Structure of Ubiquitin-Conjugating Enzyme From Naegleria Fowleri with Modified CYS99 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ubiquitin-Conjugating Enzyme From Naegleria Fowleri with Modified CYS99 (pdb code 5v0r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Ubiquitin-Conjugating Enzyme From Naegleria Fowleri with Modified CYS99, PDB code: 5v0r:

Magnesium binding site 1 out of 1 in 5v0r

Go back to Magnesium Binding Sites List in 5v0r
Magnesium binding site 1 out of 1 in the Crystal Structure of Ubiquitin-Conjugating Enzyme From Naegleria Fowleri with Modified CYS99


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ubiquitin-Conjugating Enzyme From Naegleria Fowleri with Modified CYS99 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:16.6
occ:1.00
O A:HOH360 2.0 17.5 1.0
O A:HOH310 2.0 16.2 1.0
O A:HOH365 2.1 19.7 1.0
O A:HOH539 2.1 20.0 1.0
O A:HOH398 4.1 24.2 1.0
OG1 A:THR118 4.1 13.8 1.0
OD1 A:ASP114 4.1 17.5 1.0
OD2 A:ASP114 4.3 15.2 1.0
O A:HOH481 4.4 33.7 1.0
CG A:ASP114 4.6 15.9 1.0
O A:HOH425 4.8 27.9 1.0
CG2 A:THR118 4.9 15.4 1.0
O A:HOH515 4.9 29.7 1.0
CB A:PRO31 4.9 16.8 1.0

Reference:

R.M.Irwin, S.J.Mayclin, D.D.Lorimer, T.E.Edwards. Crystal Structure of Ubiquitin-Conjugating Enzyme From Naegleria Fowleri with Modified CYS99 To Be Published.
Page generated: Mon Dec 14 21:17:34 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy