Magnesium in PDB 5vk4: Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium

All present enzymatic activity of Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium:
6.3.3.1;

The structure of Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium, PDB code: 5vk4 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.83 / 2.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.250, 79.610, 150.070, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 24.4

The binding sites of Magnesium atom in the Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium (pdb code 5vk4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium, PDB code: 5vk4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:89.7 occ:1.00 OD2 A:ASP92 2.3 51.4 1.0 O3G B:ANP401 2.4 0.0 1.0 OD2 A:ASP63 2.7 51.4 1.0 N3B B:ANP401 3.0 0.6 1.0 CG A:ASP92 3.2 40.1 1.0 PG B:ANP401 3.2 0.6 1.0 O A:MET88 3.4 37.8 1.0 OD1 A:ASP92 3.4 33.3 1.0 O2B B:ANP401 3.6 0.9 1.0 PB B:ANP401 3.6 0.0 1.0 O1B B:ANP401 3.7 94.3 1.0 CG A:ASP63 3.8 50.3 1.0 CG2 A:THR247 4.0 30.0 1.0 OG1 A:THR247 4.0 37.2 1.0 O2G B:ANP401 4.2 0.3 1.0 CB A:THR247 4.3 29.0 1.0 C A:MET88 4.3 33.2 1.0 O1G B:ANP401 4.3 0.9 1.0 SD A:MET88 4.4 37.4 1.0 CB A:ASP92 4.5 22.4 1.0 CB A:MET88 4.6 20.3 1.0 ND1 A:HIS245 4.6 38.6 1.0 OD1 A:ASP63 4.6 57.4 1.0 O B:HOH502 4.7 39.8 1.0 CA A:MET88 4.7 26.7 1.0 CB A:ASP63 4.7 38.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:48.4 occ:1.00 O1A B:ANP401 2.4 76.6 1.0 OE1 B:GLU139 2.7 58.2 1.0 N B:THR140 3.3 40.1 1.0 CD B:GLU139 3.4 47.2 1.0 PA B:ANP401 3.4 79.1 1.0 O B:THR140 3.5 47.0 1.0 O2A B:ANP401 3.5 84.7 1.0 O B:HOH520 3.6 50.2 1.0 OE2 B:GLU139 3.9 59.9 1.0 C5' B:ANP401 4.0 61.9 1.0 O B:HOH501 4.0 79.3 1.0 O5' B:ANP401 4.0 68.4 1.0 CA B:GLU139 4.1 35.0 1.0 C B:THR140 4.1 35.3 1.0 O B:HOH502 4.2 39.8 1.0 CA B:THR140 4.2 36.6 1.0 C B:GLU139 4.2 38.9 1.0 C8 B:ANP401 4.3 43.8 1.0 CG B:GLU139 4.4 37.2 1.0 CB B:THR140 4.5 41.3 1.0 O1G B:ANP401 4.5 0.9 1.0 N7 B:ANP401 4.5 42.0 1.0 CB B:GLU139 4.6 37.0 1.0 O3A B:ANP401 4.9 86.9 1.0 OG1 B:THR140 5.0 36.8 1.0 N3B B:ANP401 5.0 0.6 1.0

T.E.Edwards, J.Abendroth, D.D.Lorimer, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Phosphoribosylformylglycinamidine Cyclo-Ligase From Neisseria Gonorrhoeae Bound to Amppnp and Magnesium To Be Published.