Magnesium in PDB 5vn4: Crystal Structure of Adenine Phosphoribosyl Transferase From Trypanosoma Brucei in Complex with Amp, Pyrophosphate, and Ribose-5- Phosphate

Enzymatic activity of Crystal Structure of Adenine Phosphoribosyl Transferase From Trypanosoma Brucei in Complex with Amp, Pyrophosphate, and Ribose-5- Phosphate

All present enzymatic activity of Crystal Structure of Adenine Phosphoribosyl Transferase From Trypanosoma Brucei in Complex with Amp, Pyrophosphate, and Ribose-5- Phosphate:
2.4.2.7;

Protein crystallography data

The structure of Crystal Structure of Adenine Phosphoribosyl Transferase From Trypanosoma Brucei in Complex with Amp, Pyrophosphate, and Ribose-5- Phosphate, PDB code: 5vn4 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.840, 72.850, 85.610, 90.00, 90.00, 90.00
R / Rfree (%) 14.3 / 17.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Adenine Phosphoribosyl Transferase From Trypanosoma Brucei in Complex with Amp, Pyrophosphate, and Ribose-5- Phosphate (pdb code 5vn4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Adenine Phosphoribosyl Transferase From Trypanosoma Brucei in Complex with Amp, Pyrophosphate, and Ribose-5- Phosphate, PDB code: 5vn4:

Magnesium binding site 1 out of 1 in 5vn4

Go back to Magnesium Binding Sites List in 5vn4
Magnesium binding site 1 out of 1 in the Crystal Structure of Adenine Phosphoribosyl Transferase From Trypanosoma Brucei in Complex with Amp, Pyrophosphate, and Ribose-5- Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Adenine Phosphoribosyl Transferase From Trypanosoma Brucei in Complex with Amp, Pyrophosphate, and Ribose-5- Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:57.7
occ:1.00
 O31 A:PPV303 1.9 15.9 0.7
O32 A:PPV303 1.9 13.7 0.7
NZ A:LYS103 2.0 30.9 1.0
P1 A:PPV303 2.2 14.9 0.7
NZ B:LYS106 2.2 20.8 0.3
NZ B:LYS106 2.3 21.7 0.6
O21 A:PPV303 2.3 17.4 0.7
OPP A:PPV303 2.6 14.9 0.7
P2 A:PPV303 2.7 12.9 0.7
CE A:LYS103 3.3 30.4 1.0
O22 A:PPV303 3.4 10.3 0.7
O A:HOH413 3.5 51.9 1.0
CE B:LYS106 3.7 21.1 0.6
CE B:LYS106 3.7 20.3 0.3
O11 A:PPV303 3.7 17.8 0.7
O12 A:PPV303 3.9 13.3 0.7
CD A:LYS103 4.0 30.9 1.0
O A:HOH476 4.0 13.8 1.0
O B:HOH467 4.2 23.5 1.0
OG A:SER81 4.2 15.9 0.6
CD B:LYS106 4.3 18.8 0.3
CD B:LYS106 4.3 18.1 0.6
OG A:SER81 4.6 17.2 0.4
O A:HOH412 4.7 24.2 1.0
O A:HOH553 4.7 37.3 1.0
N A:SER81 4.7 12.1 1.0
NH2 B:ARG102 4.7 15.7 1.0
O A:HOH408 4.9 7.4 1.0
O A:ASP80 4.9 13.7 1.0
CB A:SER81 5.0 13.5 0.6

Reference:

S.J.Mayclin, D.M.Dranow, D.D.Lorimer, T.E.Edwards. Crystal Structure of Adenine Phosphoribosyl Transferase From Trypanosoma Brucei in Complex with Amp, Pyrophosphate, and Ribose-5-Phosphate To Be Published.
Page generated: Mon Dec 14 21:18:31 2020

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