Atomistry » Magnesium » PDB 5v60-5voi » 5vn6
Atomistry »
  Magnesium »
    PDB 5v60-5voi »
      5vn6 »

Magnesium in PDB 5vn6: Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria

Enzymatic activity of Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria

All present enzymatic activity of Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria:
1.14.11.17;

Protein crystallography data

The structure of Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria, PDB code: 5vn6 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.47 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.180, 84.890, 95.680, 90.00, 110.53, 90.00
R / Rfree (%) 16.5 / 20.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria (pdb code 5vn6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria, PDB code: 5vn6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5vn6

Go back to Magnesium Binding Sites List in 5vn6
Magnesium binding site 1 out of 2 in the Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg300

b:48.0
occ:1.00
NE2 A:HIS258 2.1 57.3 1.0
OD1 A:ASP100 2.3 64.7 1.0
NE2 A:HIS98 2.4 53.2 1.0
O A:HOH521 2.6 65.0 1.0
CE1 A:HIS258 3.0 53.7 1.0
CD2 A:HIS258 3.2 52.3 1.0
CG A:ASP100 3.2 64.1 1.0
CE1 A:HIS98 3.3 51.2 1.0
CD2 A:HIS98 3.4 50.9 1.0
OD2 A:ASP100 3.5 72.8 1.0
ND1 A:HIS258 4.1 49.7 1.0
CG A:HIS258 4.3 48.1 1.0
ND1 A:HIS98 4.4 53.5 1.0
CG A:HIS98 4.5 50.9 1.0
CB A:ASP100 4.6 48.3 1.0
CA A:ASP100 4.9 43.3 1.0

Magnesium binding site 2 out of 2 in 5vn6

Go back to Magnesium Binding Sites List in 5vn6
Magnesium binding site 2 out of 2 in the Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg300

b:47.7
occ:1.00
NE2 B:HIS258 2.1 65.8 1.0
OD1 B:ASP100 2.3 66.2 1.0
NE2 B:HIS98 2.3 48.2 1.0
CD2 B:HIS258 3.1 59.1 1.0
CE1 B:HIS258 3.1 63.0 1.0
CE1 B:HIS98 3.2 48.4 1.0
CG B:ASP100 3.3 74.7 1.0
CD2 B:HIS98 3.3 47.1 1.0
OD2 B:ASP100 3.5 78.3 1.0
CG B:HIS258 4.2 53.4 1.0
ND1 B:HIS258 4.2 59.2 1.0
ND1 B:HIS98 4.3 46.3 1.0
CG B:HIS98 4.4 46.6 1.0
CB B:ASP100 4.6 69.2 1.0
CB B:GLU94 4.9 44.5 1.0
CA B:ASP100 4.9 56.4 1.0

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, T.E.Edwards. Crystal Structure of Taurine Dioxygenase From Burkholderia Ambifaria To Be Published.
Page generated: Mon Sep 30 06:11:23 2024

Last articles

Mg in 8ASA
Mg in 8AV7
Mg in 8AV8
Mg in 8AV4
Mg in 8AV3
Mg in 8AV0
Mg in 8AV5
Mg in 8AUY
Mg in 8AU2
Mg in 8ASN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy