Magnesium in PDB 5w15: Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria.

Protein crystallography data

The structure of Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria., PDB code: 5w15 was solved by Ssgcid, Seattle Structural Genomics Center For Infectious Disease(Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.070, 143.590, 75.850, 90.00, 111.34, 90.00
R / Rfree (%) 16.6 / 18.8

Other elements in 5w15:

The structure of Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria. also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria. (pdb code 5w15). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria., PDB code: 5w15:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5w15

Go back to Magnesium Binding Sites List in 5w15
Magnesium binding site 1 out of 2 in the Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:18.1
occ:1.00
OH C:TYR149 2.9 23.9 1.0
CZ C:TYR149 3.7 22.8 1.0
CE2 C:TYR149 3.7 22.7 1.0
CE1 C:TYR149 4.9 21.9 1.0
CD2 C:TYR149 4.9 21.8 1.0

Magnesium binding site 2 out of 2 in 5w15

Go back to Magnesium Binding Sites List in 5w15
Magnesium binding site 2 out of 2 in the Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg301

b:14.7
occ:1.00
O C:HOH563 3.1 23.3 1.0
O D:HOH675 3.1 21.9 1.0
NE2 D:GLN231 3.3 16.3 1.0
NH1 C:ARG90 3.3 17.7 1.0
NH1 D:ARG244 3.4 19.2 1.0
CD C:ARG90 3.7 16.9 1.0
CD D:ARG244 3.8 17.2 1.0
CG D:GLN231 3.8 16.5 1.0
CB C:ALA113 3.9 17.0 1.0
CD D:GLN231 4.0 16.4 1.0
CG C:ARG90 4.1 15.8 1.0
CD2 D:LEU242 4.3 15.3 1.0
CZ C:ARG90 4.3 18.0 1.0
CZ D:ARG244 4.4 19.4 1.0
NE C:ARG90 4.4 17.6 1.0
O D:HOH660 4.5 25.4 1.0
NE D:ARG244 4.5 17.9 1.0
CG D:ARG244 4.9 17.3 1.0
O D:HOH728 4.9 25.2 1.0
CB D:GLN231 4.9 16.7 1.0
O C:TYR114 5.0 17.4 1.0

Reference:

R.M.Irwin, S.J.Mayclin, D.Lorimer, T.E.Edwards. Crystal Structure of An Alpha/Beta Hydrolase Fold Protein From Burkholderia Ambifaria. To Be Published.
Page generated: Mon Dec 14 21:19:57 2020

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