Magnesium in PDB 5wdh: Motor Domain of Human Kinesin Family Member C1

The structure of Motor Domain of Human Kinesin Family Member C1, PDB code: 5wdh was solved by H.Zhu, W.Tempel, H.He, Y.Shen, J.Wang, G.Brothers, R.Landry, C.H.Arrowsmith, A.M.Edwards, H.Park, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.35 / 2.25
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	63.713, 63.713, 242.432, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 26.5

The binding sites of Magnesium atom in the Motor Domain of Human Kinesin Family Member C1 (pdb code 5wdh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Motor Domain of Human Kinesin Family Member C1, PDB code: 5wdh:

Magnesium binding site 1 out of 1 in the Motor Domain of Human Kinesin Family Member C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Motor Domain of Human Kinesin Family Member C1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:70.6 occ:1.00 OG1 A:THR417 2.0 91.9 1.0 O A:HOH901 2.0 62.6 1.0 O A:HOH902 2.1 74.3 1.0 O A:HOH904 2.1 73.0 1.0 O2B A:ADP801 2.3 72.6 1.0 O A:HOH903 2.3 63.9 1.0 CB A:THR417 3.3 81.1 1.0 PB A:ADP801 3.4 72.5 1.0 O3B A:ADP801 3.4 68.2 1.0 OD2 A:ASP565 4.0 72.3 1.0 N A:THR417 4.1 63.7 1.0 CG2 A:THR417 4.2 72.9 1.0 CA A:THR417 4.2 69.3 1.0 OD1 A:ASP565 4.3 73.0 1.0 O2A A:ADP801 4.3 60.3 1.0 O3A A:ADP801 4.4 66.5 1.0 O1B A:ADP801 4.5 57.5 1.0 CG A:ASP565 4.6 70.6 1.0 CE A:LYS416 4.7 76.1 1.0 PA A:ADP801 4.7 63.0 1.0 NZ A:LYS416 4.9 72.0 1.0 CB A:LYS416 5.0 68.8 1.0 O1A A:ADP801 5.0 62.0 1.0

H.W.Park, Z.Ma, H.Zhu, S.Jiang, R.C.Robinson, S.A.Endow. Structural Basis of Small Molecule Atpase Inhibition of A Human Mitotic Kinesin Motor Protein. Sci Rep V. 7 15121 2017.
ISSN: ESSN 2045-2322
PubMed: 29123223
DOI: 10.1038/S41598-017-14754-6