Magnesium in PDB 5wno: Crystal Structure of C. Elegans Let-23 Kinase Domain Complexed with Amp-Pnp

All present enzymatic activity of Crystal Structure of C. Elegans Let-23 Kinase Domain Complexed with Amp-Pnp:
2.7.10.1;

The structure of Crystal Structure of C. Elegans Let-23 Kinase Domain Complexed with Amp-Pnp, PDB code: 5wno was solved by L.Liu, T.M.Thaker, N.Jura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.94 / 2.39
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.097, 77.978, 106.207, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 24.8

The binding sites of Magnesium atom in the Crystal Structure of C. Elegans Let-23 Kinase Domain Complexed with Amp-Pnp (pdb code 5wno). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of C. Elegans Let-23 Kinase Domain Complexed with Amp-Pnp, PDB code: 5wno:

Magnesium binding site 1 out of 1 in the Crystal Structure of C. Elegans Let-23 Kinase Domain Complexed with Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of C. Elegans Let-23 Kinase Domain Complexed with Amp-Pnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1202 b:77.7 occ:1.00 O1A A:ANP1201 2.0 83.5 1.0 OD2 A:ASP1028 2.0 84.7 1.0 OD1 A:ASN1015 2.0 67.0 1.0 O1B A:ANP1201 2.1 84.8 1.0 PA A:ANP1201 3.0 80.5 1.0 O3G A:ANP1201 3.1 0.5 1.0 CG A:ASN1015 3.2 49.9 1.0 PB A:ANP1201 3.2 94.8 1.0 CG A:ASP1028 3.3 82.8 1.0 O3A A:ANP1201 3.3 91.2 1.0 O5' A:ANP1201 3.5 80.9 1.0 N3B A:ANP1201 3.9 0.4 1.0 ND2 A:ASN1015 4.0 57.1 1.0 OD1 A:ASP1028 4.1 80.1 1.0 PG A:ANP1201 4.1 0.5 1.0 CB A:ASP1028 4.2 72.3 1.0 CB A:ASN1015 4.2 48.4 1.0 O2A A:ANP1201 4.4 0.7 1.0 O A:ARG1014 4.4 73.1 1.0 CA A:ASN1015 4.4 50.1 1.0 O2B A:ANP1201 4.5 0.1 1.0 CG2 A:THR1027 4.7 55.3 1.0 CE A:LYS919 4.7 85.2 1.0 C5' A:ANP1201 4.8 80.7 1.0 N A:ASN1015 4.9 55.6 1.0 C A:ARG1014 4.9 67.7 1.0 C3' A:ANP1201 5.0 80.2 1.0 O A:HOH1309 5.0 73.9 1.0 O1G A:ANP1201 5.0 0.4 1.0

L.Liu, T.M.Thaker, D.M.Freed, N.Frazier, K.Malhotra, M.A.Lemmon, N.Jura. Regulation of Kinase Activity in the Caenorhabditis Elegans Egf Receptor, Let-23. Structure V. 26 270 2018.
ISSN: ISSN 1878-4186
PubMed: 29358026
DOI: 10.1016/J.STR.2017.12.012