Magnesium in PDB 5wxg: Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC

Protein crystallography data

The structure of Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC, PDB code: 5wxg was solved by S.Zhao, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.34 / 1.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 50.840, 52.868, 54.122, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 19.5

Other elements in 5wxg:

The structure of Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC (pdb code 5wxg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC, PDB code: 5wxg:

Magnesium binding site 1 out of 1 in 5wxg

Go back to Magnesium Binding Sites List in 5wxg
Magnesium binding site 1 out of 1 in the Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:19.3
occ:1.00
NE2 P:GLN5 2.2 14.3 1.0
OD2 A:ASP877 2.4 17.1 1.0
CG A:ASP877 3.1 18.7 1.0
OD1 A:ASP877 3.1 21.1 1.0
CD P:GLN5 3.3 17.3 1.0
OE1 P:GLN5 3.6 19.2 1.0
O A:HOH1134 3.8 21.0 1.0
O A:HOH1103 4.4 18.4 1.0
CB A:ASP877 4.4 15.8 1.0
CA A:GLY879 4.5 17.9 1.0
N A:GLY879 4.5 19.6 1.0
CG P:GLN5 4.6 16.2 1.0

Reference:

S.Zhao, M.Yang, W.Zhou, B.Zhang, Z.Cheng, J.Huang, M.Zhang, Z.Wang, R.Wang, Z.Chen, J.Zhu, H.Li. Kinetic and High-Throughput Profiling of Epigenetic Interactions By 3D-Carbene Chip-Based Surface Plasmon Resonance Imaging Technology Proc. Natl. Acad. Sci. V. 114 E7245 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28808021
DOI: 10.1073/PNAS.1704155114
Page generated: Mon Dec 14 21:25:45 2020

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