Magnesium in PDB 5x40: Structure of A Cbio Dimer Bound with Amppcp

The structure of Structure of A Cbio Dimer Bound with Amppcp, PDB code: 5x40 was solved by Z.Bao, X.Qi, J.Wang, P.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.67 / 1.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	71.339, 74.399, 106.849, 90.00, 90.00, 90.00
R / Rfree (%)	15.7 / 17.7

The binding sites of Magnesium atom in the Structure of A Cbio Dimer Bound with Amppcp (pdb code 5x40). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of A Cbio Dimer Bound with Amppcp, PDB code: 5x40:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of A Cbio Dimer Bound with Amppcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Cbio Dimer Bound with Amppcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:27.3 occ:1.00 O3G A:ACP302 2.2 17.1 1.0 OG A:SER45 2.3 14.7 1.0 O B:HOH490 2.3 26.5 1.0 OE1 A:GLN88 2.3 23.5 1.0 O1B A:ACP302 2.4 13.8 1.0 O1A A:ACP302 3.2 16.1 1.0 CB A:SER45 3.2 14.0 1.0 CD A:GLN88 3.3 19.7 1.0 O A:HOH426 3.4 15.9 1.0 PG A:ACP302 3.4 15.4 1.0 PB A:ACP302 3.4 13.9 1.0 C3B A:ACP302 3.5 7.6 1.0 NE2 A:GLN88 3.6 20.1 1.0 O A:HOH563 3.8 25.3 1.0 O A:HOH556 4.0 31.4 1.0 O3A A:ACP302 4.1 13.7 1.0 PA A:ACP302 4.1 15.7 1.0 N B:GLY143 4.1 14.9 1.0 CA A:SER45 4.3 12.8 1.0 NE2 A:GLN166 4.3 16.6 1.0 N A:SER45 4.3 13.4 1.0 O1G A:ACP302 4.4 17.1 1.0 OD2 A:ASP165 4.4 15.3 1.0 CB B:SER142 4.4 13.8 1.0 O2G A:ACP302 4.5 14.8 1.0 OD1 A:ASP165 4.6 16.6 1.0 CG A:GLN88 4.7 15.2 1.0 O2A A:ACP302 4.7 16.5 1.0 O2B A:ACP302 4.8 13.6 1.0 CA B:SER142 4.8 14.0 1.0 O A:HOH626 4.9 31.4 1.0 CA B:GLY143 4.9 16.2 1.0 CG A:ASP165 5.0 14.0 1.0 C B:SER142 5.0 13.3 1.0 CB A:GLN88 5.0 14.9 1.0

Magnesium binding site 2 out of 2 in the Structure of A Cbio Dimer Bound with Amppcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Cbio Dimer Bound with Amppcp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:51.2 occ:1.00 NE2 B:GLN88 2.1 20.6 1.0 O2G B:ACP302 2.1 26.0 1.0 OG B:SER45 2.1 17.7 1.0 O B:HOH441 2.2 19.2 1.0 O2B B:ACP302 2.5 20.8 1.0 O B:HOH474 3.1 18.2 1.0 PG B:ACP302 3.2 21.8 1.0 CD B:GLN88 3.2 18.9 1.0 CB B:SER45 3.3 14.6 1.0 C3B B:ACP302 3.5 15.5 1.0 PB B:ACP302 3.6 17.5 1.0 OE1 B:GLN88 3.7 29.3 1.0 O2A B:ACP302 3.7 14.6 1.0 O B:HOH597 3.8 34.3 1.0 NE2 B:GLN166 3.9 15.9 1.0 OD1 B:ASP165 4.1 21.8 1.0 OD2 B:ASP165 4.1 18.0 1.0 O1G B:ACP302 4.3 19.4 1.0 O3G B:ACP302 4.3 20.7 1.0 N A:GLY143 4.3 13.3 1.0 CA B:SER45 4.3 13.0 1.0 N B:SER45 4.3 13.3 1.0 O3A B:ACP302 4.4 18.5 1.0 CG B:GLN88 4.5 17.7 1.0 CG B:ASP165 4.5 17.1 1.0 PA B:ACP302 4.6 14.3 1.0 O B:HOH504 4.6 27.2 1.0 CD B:GLN166 4.7 17.2 1.0 O1B B:ACP302 4.8 15.4 1.0 CB A:SER142 4.8 14.2 1.0 CB B:GLN88 4.8 16.1 1.0 CA A:GLY143 5.0 13.2 1.0

Z.Bao, X.Qi, S.Hong, K.Xu, F.He, M.Zhang, J.Chen, D.Chao, W.Zhao, D.Li, J.Wang, P.Zhang. Structure and Mechanism of A Group-I Cobalt Energy Coupling Factor Transporter Cell Res. V. 27 675 2017.
ISSN: ISSN 1748-7838
PubMed: 28322252
DOI: 10.1038/CR.2017.38