Magnesium in PDB 5x4b: Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis

The structure of Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis, PDB code: 5x4b was solved by V.Singh, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.65 / 1.50
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	42.260, 43.750, 50.710, 66.88, 79.88, 70.82
R / Rfree (%)	15.3 / 18.1

The structure of Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis also contains other interesting chemical elements:

Potassium	(K)	3 atoms
Sodium	(Na)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis (pdb code 5x4b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis, PDB code: 5x4b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg204 b:10.5 occ:0.40 O A:HOH362 1.8 12.5 1.0 O A:HOH334 1.9 10.0 1.0 OG A:SER17 2.0 10.3 0.4 O2B A:GDP201 2.3 8.7 1.0 O A:HOH401 2.3 14.5 1.0 CB A:SER17 3.2 11.1 0.4 CB A:SER17 3.3 9.3 0.6 PB A:GDP201 3.5 9.2 1.0 OG A:SER17 3.6 11.1 0.6 O A:HOH329 3.7 34.8 1.0 O1B A:GDP201 3.7 9.7 1.0 OD2 A:ASP57 3.9 15.5 1.0 N A:SER17 3.9 8.6 1.0 CA A:SER17 4.1 9.6 0.4 O1A A:GDP201 4.1 12.2 1.0 CA A:SER17 4.2 8.8 0.6 CB A:ARG39 4.5 29.8 1.0 O3A A:GDP201 4.5 9.0 1.0 O3B A:GDP201 4.5 9.2 1.0 O A:HOH414 4.6 35.9 1.0 PA A:GDP201 4.8 9.7 1.0 O A:HOH350 4.8 14.1 1.0 CG A:ASP57 4.9 11.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg203 b:18.0 occ:0.40 O B:HOH310 1.9 14.6 1.0 O1B B:GDP201 1.9 11.3 1.0 O B:HOH358 2.1 19.3 1.0 O B:HOH408 2.2 13.3 0.5 OG B:SER17 2.2 14.5 0.5 O B:HOH316 3.1 26.6 1.0 PB B:GDP201 3.1 9.6 1.0 CB B:SER17 3.3 11.3 0.5 O3B B:GDP201 3.4 10.6 1.0 CB B:SER17 3.4 13.7 0.5 OD2 B:ASP57 3.8 17.0 1.0 N B:SER17 3.8 10.1 1.0 CA B:SER17 4.1 11.7 0.5 O B:HOH411 4.1 33.5 1.0 O2B B:GDP201 4.1 8.9 1.0 CA B:SER17 4.1 11.1 0.5 O2A B:GDP201 4.2 12.2 1.0 O3A B:GDP201 4.3 10.3 1.0 OG B:SER17 4.5 17.6 0.5 PA B:GDP201 4.6 10.9 1.0 O B:HOH329 4.7 15.5 1.0 CG B:ASP57 4.8 12.8 1.0 O1A B:GDP201 4.8 10.7 1.0 O B:GLY59 4.8 18.1 1.0 O B:HOH314 4.9 31.4 1.0 NZ B:LYS16 4.9 10.1 1.0 CB B:LYS16 4.9 9.2 1.0 C B:LYS16 4.9 10.8 1.0 C B:GLY59 4.9 15.2 1.0

V.Singh, B.Prakash. Crystal Structure of N-Terminal G-Domain of Enga From Bacillus Subtilis To Be Published.