Magnesium in PDB 5x4h: The Crystal Structure of Pyrococcus Furiosus Recj (Wild-Type)

The structure of The Crystal Structure of Pyrococcus Furiosus Recj (Wild-Type), PDB code: 5x4h was solved by M.J.Li, G.S.Yi, F.Yu, H.Zhou, J.N.Chen, C.Y.Xu, F.P.Wang, X.Xiao, J.H.He, X.P.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.03 / 2.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.409, 66.625, 59.857, 90.00, 112.09, 90.00
R / Rfree (%)	20.7 / 22.3

The binding sites of Magnesium atom in the The Crystal Structure of Pyrococcus Furiosus Recj (Wild-Type) (pdb code 5x4h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of Pyrococcus Furiosus Recj (Wild-Type), PDB code: 5x4h:

Magnesium binding site 1 out of 1 in the The Crystal Structure of Pyrococcus Furiosus Recj (Wild-Type)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Pyrococcus Furiosus Recj (Wild-Type) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:12.3 occ:1.00 OD1 A:ASP83 2.0 36.0 1.0 OD2 A:ASP165 2.0 36.6 1.0 OD2 A:ASP36 2.5 20.4 1.0 OD2 A:ASP83 2.6 38.8 1.0 CG A:ASP83 2.6 36.4 1.0 NE2 A:HIS106 2.7 29.0 1.0 CG A:ASP165 2.9 34.2 1.0 OD1 A:ASP165 3.2 34.5 1.0 CG A:ASP36 3.4 19.2 1.0 CD2 A:HIS106 3.6 29.2 1.0 CE1 A:HIS106 3.6 29.6 1.0 CB A:ASP36 3.7 18.6 1.0 OD2 A:ASP34 3.8 25.0 0.6 CE1 A:HIS107 4.0 51.4 1.0 CB A:ASP83 4.1 34.7 1.0 N A:GLY136 4.2 25.2 1.0 NE2 A:HIS107 4.2 51.0 1.0 CB A:ASP165 4.3 31.5 1.0 OD1 A:ASP36 4.6 18.6 1.0 O A:ASP83 4.6 43.9 1.0 CA A:GLY136 4.7 25.8 1.0 CG A:ASP34 4.7 23.9 0.6 ND1 A:HIS106 4.7 30.1 1.0 CG A:HIS106 4.7 30.1 1.0 CA A:ASP83 4.8 35.9 1.0 OD1 A:ASP34 4.9 21.9 0.6

M.J.Li, G.S.Yi, F.Yu, H.Zhou, J.N.Chen, C.Y.Xu, F.P.Wang, X.Xiao, J.H.He, X.P.Liu. The Crystal Structure of Pyrococcus Furiosus Recj Implicates It As An Ancestor of Eukaryotic CDC45 Nucleic Acids Res. V. 45 12551 2017.
ISSN: ISSN 0305-1048
DOI: 10.1093/NAR/GKX887