Magnesium in PDB 5x5h: Crystal Strcuture of Metb From Corynebacterium Glutamicum

All present enzymatic activity of Crystal Strcuture of Metb From Corynebacterium Glutamicum:
2.5.1.48;

The structure of Crystal Strcuture of Metb From Corynebacterium Glutamicum, PDB code: 5x5h was solved by H.-Y.Sagong, K.-J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	80.93 / 1.51
Space group	F 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	58.574, 149.851, 161.858, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 17.2

The binding sites of Magnesium atom in the Crystal Strcuture of Metb From Corynebacterium Glutamicum (pdb code 5x5h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Strcuture of Metb From Corynebacterium Glutamicum, PDB code: 5x5h:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Strcuture of Metb From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Strcuture of Metb From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg405 b:23.0 occ:1.00 OE1 A:GLU71 2.6 18.2 1.0 O A:GLU71 2.8 15.7 1.0 N A:LEU191 2.9 12.3 1.0 C A:GLN189 3.1 13.8 1.0 N A:PRO190 3.3 12.9 1.0 CA A:GLN189 3.3 13.6 1.0 CB A:LEU191 3.4 15.1 1.0 CG A:LEU191 3.4 14.1 1.0 CB A:GLN189 3.5 14.6 1.0 CD A:GLU71 3.6 16.8 1.0 O A:GLN189 3.6 14.2 1.0 CB A:GLU71 3.6 14.3 1.0 CD A:PRO190 3.6 12.9 1.0 C A:GLU71 3.6 13.8 1.0 CA A:LEU191 3.6 13.9 1.0 CA A:GLU71 3.8 12.7 1.0 C A:PRO190 3.8 13.6 1.0 CD1 A:LEU191 3.9 14.6 1.0 CA A:PRO190 4.1 12.0 1.0 CG A:GLU71 4.2 12.8 1.0 N A:LYS192 4.2 14.9 1.0 CG2 A:VAL198 4.2 14.0 1.0 CG A:GLN189 4.4 16.7 1.0 C A:LEU191 4.4 16.1 1.0 OE2 A:GLU71 4.6 15.7 1.0 CD2 A:LEU191 4.7 15.1 1.0 CB A:PRO190 4.7 12.2 1.0 N A:GLN189 4.7 12.7 1.0 CG A:PRO190 4.8 12.1 1.0 N A:GLY72 4.9 13.3 1.0 CG A:LYS192 4.9 21.0 1.0 O A:PRO190 5.0 13.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Strcuture of Metb From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Strcuture of Metb From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg406 b:21.7 occ:1.00 O A:PHE38 2.7 14.4 1.0 O A:GLU51 2.8 13.8 1.0 OE1 A:GLN40 2.9 18.4 1.0 OG1 A:THR37 3.3 14.8 1.0 C A:GLU51 3.6 14.2 1.0 CA A:GLU51 3.7 15.5 1.0 CD A:GLN40 3.7 16.0 1.0 CG A:GLN40 3.8 14.9 1.0 C A:PHE38 3.8 12.2 1.0 N A:PHE38 3.9 11.8 1.0 CB A:GLU51 3.9 19.6 1.0 CA A:PHE38 4.4 11.9 1.0 CB A:THR37 4.6 13.2 1.0 CB A:PHE38 4.8 12.4 1.0 N A:TYR52 4.9 14.0 1.0 CA A:THR37 4.9 11.2 1.0 C A:THR37 4.9 12.1 1.0 NE2 A:GLN40 4.9 14.8 1.0 N A:ALA39 4.9 12.4 1.0

H.-Y.Sagong, K.-J.Kim. Structural Insights Into Substrate Specificity of Cystathionine Gamma-Synthase From Corynebacterium Glutamicum J. Agric. Food Chem. V. 65 6002 2017.
ISSN: ESSN 1520-5118
PubMed: 28675039
DOI: 10.1021/ACS.JAFC.7B02391