Atomistry » Magnesium » PDB 5x86-5xf5 » 5xc0
Atomistry »
  Magnesium »
    PDB 5x86-5xf5 »
      5xc0 »

Magnesium in PDB 5xc0: Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Enzymatic activity of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

All present enzymatic activity of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5xc0 was solved by H.Bansia, P.Mahanta, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.96 / 2.32
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.229, 67.390, 177.760, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 24.8

Other elements in 5xc0:

The structure of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 (pdb code 5xc0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5xc0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5xc0

Go back to Magnesium Binding Sites List in 5xc0
Magnesium binding site 1 out of 2 in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:2.9
occ:1.00
 O A:ARG351 2.2 14.1 1.0
OD1 A:ASP354 2.2 17.9 1.0
OD1 A:ASN292 2.3 15.6 1.0
O A:HOH543 2.3 1.0 1.0
O A:HOH512 2.4 5.1 1.0
O A:HOH559 2.5 24.4 1.0
CG A:ASP354 3.3 18.9 1.0
C A:ARG351 3.3 13.9 1.0
CG A:ASN292 3.4 15.5 1.0
OD2 A:ASP354 3.7 19.3 1.0
CB A:ASN292 4.2 15.4 1.0
CA A:ARG351 4.2 14.2 1.0
N A:ILE352 4.2 13.6 1.0
CA A:ILE352 4.2 13.8 1.0
O A:HOH578 4.2 2.3 1.0
CA A:ASN292 4.4 15.6 1.0
O A:ASP354 4.5 21.4 1.0
ND2 A:ASN292 4.5 15.9 1.0
O A:ASN292 4.6 16.7 1.0
C A:ASP354 4.6 21.0 1.0
CB A:ASP354 4.7 19.3 1.0
O A:HOH523 4.7 22.4 1.0
CB A:ARG351 4.8 14.1 1.0
OE1 A:GLU296 4.8 19.4 1.0
O A:HOH547 4.8 30.4 1.0
C A:ILE352 4.9 14.7 1.0
CG A:GLU296 4.9 17.3 1.0
N A:ASP354 4.9 19.2 1.0
CA A:ASP354 4.9 19.8 1.0
C A:ASN292 5.0 16.6 1.0

Magnesium binding site 2 out of 2 in 5xc0

Go back to Magnesium Binding Sites List in 5xc0
Magnesium binding site 2 out of 2 in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:9.0
occ:1.00
 O B:HOH503 2.2 22.6 1.0
O B:ARG351 2.2 27.9 1.0
OD1 B:ASN292 2.2 28.9 1.0
OD1 B:ASP354 2.3 30.9 1.0
O B:HOH502 2.9 25.6 1.0
CG B:ASP354 3.3 30.5 1.0
C B:ARG351 3.4 27.1 1.0
CG B:ASN292 3.4 28.2 1.0
OD2 B:ASP354 3.6 33.1 1.0
N B:ILE352 4.3 24.9 1.0
CB B:ASN292 4.3 28.0 1.0
CA B:ILE352 4.3 24.1 1.0
CA B:ARG351 4.3 28.5 1.0
ND2 B:ASN292 4.4 28.3 1.0
CA B:ASN292 4.5 27.2 1.0
CB B:ASP354 4.7 29.3 1.0
O B:ASN292 4.7 26.1 1.0
O B:ASP354 4.8 26.7 1.0
OE1 B:GLU296 4.8 35.1 1.0
CG B:GLU296 4.8 31.5 1.0
CB B:ARG351 4.9 30.4 1.0
C B:ILE352 4.9 23.1 1.0
C B:ASP354 5.0 27.8 1.0
N B:ASP354 5.0 26.2 1.0

Reference:

H.Bansia, P.Mahanta, S.Ramakumar. Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 To Be Published.
Page generated: Mon Sep 30 09:16:00 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy