Magnesium in PDB 5xc3: Crystal Structure of Acanthamoeba Polyphaga Mimivirus Rab Gtpase in Complex with Gdp

The structure of Crystal Structure of Acanthamoeba Polyphaga Mimivirus Rab Gtpase in Complex with Gdp, PDB code: 5xc3 was solved by B.Ku, J.A.You, S.J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.69 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	35.575, 66.726, 69.754, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 19.9

The binding sites of Magnesium atom in the Crystal Structure of Acanthamoeba Polyphaga Mimivirus Rab Gtpase in Complex with Gdp (pdb code 5xc3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Acanthamoeba Polyphaga Mimivirus Rab Gtpase in Complex with Gdp, PDB code: 5xc3:

Magnesium binding site 1 out of 1 in the Crystal Structure of Acanthamoeba Polyphaga Mimivirus Rab Gtpase in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Acanthamoeba Polyphaga Mimivirus Rab Gtpase in Complex with Gdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1201 b:13.6 occ:1.00 O2B A:GDP1200 2.0 13.7 1.0 O A:HOH1339 2.0 17.0 1.0 O A:HOH1309 2.0 13.5 1.0 O A:HOH1318 2.1 17.2 1.0 OG A:SER19 2.1 15.2 1.0 O A:HOH1312 2.1 16.1 1.0 CB A:SER19 3.2 14.9 1.0 PB A:GDP1200 3.3 13.7 1.0 O3B A:GDP1200 3.5 14.9 1.0 N A:SER19 3.9 11.0 1.0 O A:HOH1388 4.0 23.9 1.0 OD2 A:ASP61 4.0 14.9 1.0 O2A A:GDP1200 4.1 16.8 1.0 CA A:SER19 4.1 11.2 1.0 O A:THR62 4.2 15.2 1.0 OG1 A:THR62 4.2 15.8 1.0 OD1 A:ASP61 4.2 15.5 1.0 O1B A:GDP1200 4.3 12.8 1.0 O3A A:GDP1200 4.3 13.5 1.0 O A:HOH1391 4.4 30.0 1.0 OE1 A:GLU66 4.5 15.7 1.0 CG A:ASP61 4.5 14.3 1.0 PA A:GDP1200 4.6 15.0 1.0 O1A A:GDP1200 4.8 14.9 1.0 CB A:LYS18 4.8 11.7 1.0 CE A:LYS18 4.9 15.0 1.0 O A:HOH1327 4.9 25.4 1.0 NZ A:LYS18 5.0 13.2 1.0 C A:THR62 5.0 16.1 1.0

B.Ku, J.A.You, K.J.Oh, H.Y.Yun, H.S.Lee, H.C.Shin, J.Jung, Y.B.Shin, S.J.Kim. Crystal Structures of Two Forms of the Acanthamoeba Polyphaga Mimivirus Rab Gtpase Arch. Virol. V. 162 3407 2017.
ISSN: ISSN 1432-8798
PubMed: 28779233
DOI: 10.1007/S00705-017-3510-2