Magnesium in PDB 5xgd: Crystal Structure of the Pas-Ggdef-Eal Domain of PA0861 From Pseudomonas Aeruginosa in Complex with Gtp

The structure of Crystal Structure of the Pas-Ggdef-Eal Domain of PA0861 From Pseudomonas Aeruginosa in Complex with Gtp, PDB code: 5xgd was solved by C.Liu, C.W.Liew, R.Sreekanth, J.Lescar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.55 / 2.80
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	134.729, 134.729, 209.953, 90.00, 90.00, 120.00
R / Rfree (%)	17.7 / 25.2

The binding sites of Magnesium atom in the Crystal Structure of the Pas-Ggdef-Eal Domain of PA0861 From Pseudomonas Aeruginosa in Complex with Gtp (pdb code 5xgd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Pas-Ggdef-Eal Domain of PA0861 From Pseudomonas Aeruginosa in Complex with Gtp, PDB code: 5xgd:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Pas-Ggdef-Eal Domain of PA0861 From Pseudomonas Aeruginosa in Complex with Gtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Pas-Ggdef-Eal Domain of PA0861 From Pseudomonas Aeruginosa in Complex with Gtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:17.7 occ:1.00 OD2 A:ASP455 2.1 24.7 1.0 O3G A:GTP901 2.1 57.7 1.0 O1A A:GTP901 2.4 50.1 1.0 O A:LEU413 2.4 28.8 1.0 OD1 A:ASP412 2.4 44.1 1.0 O2B A:GTP901 2.5 53.5 1.0 CG A:ASP455 2.8 25.0 1.0 OD1 A:ASP455 3.0 28.0 1.0 PG A:GTP901 3.5 58.0 1.0 PB A:GTP901 3.6 54.2 1.0 NZ A:LYS525 3.6 53.2 1.0 C A:LEU413 3.6 31.4 1.0 CG A:ASP412 3.6 42.7 1.0 PA A:GTP901 3.6 49.5 1.0 O3B A:GTP901 3.8 56.9 1.0 O3A A:GTP901 3.8 52.0 1.0 N A:LEU413 4.1 27.6 1.0 O1G A:GTP901 4.3 57.3 1.0 CB A:ASP455 4.3 19.0 1.0 CA A:LEU413 4.4 28.6 1.0 CB A:ASP412 4.4 29.8 1.0 C A:ASP412 4.4 30.2 1.0 O2G A:GTP901 4.5 58.2 1.0 OD2 A:ASP412 4.5 51.7 1.0 N A:ASP414 4.6 29.9 1.0 CE A:LYS525 4.6 50.0 1.0 O2A A:GTP901 4.6 47.7 1.0 O5' A:GTP901 4.7 49.3 1.0 CA A:ASP414 4.7 29.9 1.0 CB A:PHE416 4.7 38.1 1.0 CA A:ASP412 4.8 27.9 1.0 CB A:LEU413 4.8 28.8 1.0 O1B A:GTP901 4.9 56.8 1.0 O A:ASP412 4.9 29.2 1.0 N A:PHE416 4.9 38.3 1.0

C.Liu, C.W.Liew, Y.H.Wong, S.T.Tan, W.H.Poh, M.S.S.Manimekalai, S.Rajan, L.Xin, Z.X.Liang, G.Gruber, S.A.Rice, J.Lescar. Insights Into Biofilm Dispersal Regulation From the Crystal Structure of the Pas-Ggdef-Eal Region of Rbda From Pseudomonas Aeruginosa. J. Bacteriol. V. 200 2018.
ISSN: ESSN 1098-5530
PubMed: 29109186
DOI: 10.1128/JB.00515-17