Atomistry » Magnesium » PDB 5xf6-5xle » 5xin
Atomistry »
  Magnesium »
    PDB 5xf6-5xle »
      5xin »

Magnesium in PDB 5xin: Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites

Enzymatic activity of Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites

All present enzymatic activity of Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites:
5.3.1.5;

Protein crystallography data

The structure of Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites, PDB code: 5xin was solved by J.Janin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.30
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 143.450, 143.450, 231.500, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites (pdb code 5xin). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites, PDB code: 5xin:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 5xin

Go back to Magnesium Binding Sites List in 5xin
Magnesium binding site 1 out of 4 in the Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg395

b:30.9
occ:1.00
OD2 A:ASP292 2.0 13.2 1.0
OD2 A:ASP245 2.1 18.3 1.0
OE2 A:GLU181 2.1 16.9 1.0
OE1 A:GLU217 2.1 17.4 1.0
O2 A:XLS397 2.3 31.4 1.0
O4 A:XLS397 2.4 32.1 1.0
CD A:GLU181 3.0 15.8 1.0
CG A:ASP292 3.1 12.2 1.0
OE1 A:GLU181 3.2 18.1 1.0
CG A:ASP245 3.2 15.0 1.0
CD A:GLU217 3.3 16.8 1.0
C4 A:XLS397 3.5 33.0 1.0
C2 A:XLS397 3.5 32.6 1.0
C3 A:XLS397 3.8 33.0 1.0
CB A:ASP292 3.8 11.2 1.0
CB A:ASP245 3.8 11.8 1.0
O3 A:XLS397 3.8 33.1 1.0
O A:HOH454 3.9 17.2 1.0
OE2 A:GLU217 4.0 19.3 1.0
OD1 A:ASP292 4.1 12.3 1.0
CG A:GLU217 4.2 15.2 1.0
CE1 A:HIS220 4.2 11.4 1.0
OD1 A:ASP245 4.2 16.1 1.0
CB A:GLU217 4.2 12.7 1.0
O A:HOH539 4.2 26.2 1.0
CG A:GLU181 4.4 14.2 1.0
NE2 A:HIS220 4.6 10.5 1.0
ND2 A:ASN215 4.7 6.1 1.0
C1 A:XLS397 4.7 32.5 1.0
C5 A:XLS397 4.7 31.8 1.0

Magnesium binding site 2 out of 4 in 5xin

Go back to Magnesium Binding Sites List in 5xin
Magnesium binding site 2 out of 4 in the Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg395

b:26.8
occ:1.00
OE1 B:GLU217 2.0 15.1 1.0
OD2 B:ASP245 2.0 18.4 1.0
OD2 B:ASP292 2.1 15.3 1.0
OE2 B:GLU181 2.2 21.1 1.0
O2 B:XLS397 2.3 38.3 1.0
O4 B:XLS397 2.3 35.2 1.0
CD B:GLU181 3.0 19.4 1.0
OE1 B:GLU181 3.0 20.0 1.0
CD B:GLU217 3.2 13.8 1.0
CG B:ASP245 3.2 15.1 1.0
CG B:ASP292 3.2 13.5 1.0
C4 B:XLS397 3.4 37.5 1.0
C2 B:XLS397 3.5 38.7 1.0
O B:HOH458 3.7 20.5 1.0
C3 B:XLS397 3.7 38.0 1.0
O3 B:XLS397 3.8 37.9 1.0
CB B:ASP292 3.9 12.2 1.0
CB B:ASP245 3.9 12.5 1.0
OE2 B:GLU217 3.9 18.4 1.0
CG B:GLU217 4.1 13.3 1.0
OD1 B:ASP245 4.2 13.3 1.0
O B:HOH538 4.2 22.5 1.0
CB B:GLU217 4.2 11.8 1.0
CE1 B:HIS220 4.2 11.2 1.0
OD1 B:ASP292 4.3 13.7 1.0
CG B:GLU181 4.4 18.5 1.0
C5 B:XLS397 4.6 36.1 1.0
C1 B:XLS397 4.7 39.4 1.0
ND2 B:ASN215 4.7 13.8 1.0
NE2 B:HIS220 4.7 12.3 1.0
O1 B:XLS397 5.0 41.1 1.0

Magnesium binding site 3 out of 4 in 5xin

Go back to Magnesium Binding Sites List in 5xin
Magnesium binding site 3 out of 4 in the Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg395

b:22.7
occ:1.00
OE1 C:GLU217 2.0 15.2 1.0
OD2 C:ASP292 2.1 11.7 1.0
OD2 C:ASP245 2.1 18.0 1.0
OE2 C:GLU181 2.2 19.7 1.0
O2 C:XLS397 2.3 32.8 1.0
O4 C:XLS397 2.5 27.4 1.0
CD C:GLU181 3.1 17.4 1.0
CG C:ASP292 3.2 10.6 1.0
CD C:GLU217 3.2 14.2 1.0
OE1 C:GLU181 3.2 19.4 1.0
CG C:ASP245 3.2 14.4 1.0
C4 C:XLS397 3.6 28.9 1.0
C2 C:XLS397 3.6 33.1 1.0
CB C:ASP292 3.8 9.0 1.0
CB C:ASP245 3.8 11.8 1.0
C3 C:XLS397 3.9 31.3 1.0
OE2 C:GLU217 3.9 17.8 1.0
O3 C:XLS397 4.0 32.1 1.0
O C:HOH467 4.0 22.2 1.0
CG C:GLU217 4.1 12.1 1.0
O C:HOH551 4.2 25.3 1.0
CB C:GLU217 4.2 9.5 1.0
OD1 C:ASP245 4.2 15.0 1.0
OD1 C:ASP292 4.2 9.8 1.0
CE1 C:HIS220 4.2 9.3 1.0
CG C:GLU181 4.4 16.0 1.0
ND2 C:ASN215 4.6 6.0 1.0
C1 C:XLS397 4.6 33.8 1.0
NE2 C:HIS220 4.6 8.6 1.0
C5 C:XLS397 4.8 26.1 1.0
O1 C:XLS397 4.9 36.5 1.0

Magnesium binding site 4 out of 4 in 5xin

Go back to Magnesium Binding Sites List in 5xin
Magnesium binding site 4 out of 4 in the Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site- Directed Mutagenesis of Metal Binding Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg395

b:26.0
occ:1.00
OD2 D:ASP292 2.0 11.5 1.0
OE1 D:GLU217 2.0 12.8 1.0
OD2 D:ASP245 2.0 19.0 1.0
OE2 D:GLU181 2.2 19.8 1.0
O4 D:XLS397 2.4 36.0 1.0
O2 D:XLS397 2.4 35.0 1.0
CG D:ASP292 3.1 10.1 1.0
CD D:GLU181 3.1 16.9 1.0
CG D:ASP245 3.2 16.3 1.0
CD D:GLU217 3.2 14.0 1.0
OE1 D:GLU181 3.4 18.8 1.0
C4 D:XLS397 3.5 36.2 1.0
C2 D:XLS397 3.6 36.7 1.0
O3 D:XLS397 3.7 37.8 1.0
CB D:ASP292 3.7 9.9 1.0
CB D:ASP245 3.8 14.8 1.0
C3 D:XLS397 3.8 36.5 1.0
O D:HOH469 3.9 23.8 1.0
OE2 D:GLU217 4.0 19.2 1.0
O D:HOH549 4.0 26.9 1.0
CG D:GLU217 4.1 12.0 1.0
OD1 D:ASP292 4.1 9.4 1.0
CB D:GLU217 4.2 10.6 1.0
OD1 D:ASP245 4.2 13.4 1.0
CE1 D:HIS220 4.3 7.7 1.0
CG D:GLU181 4.4 15.3 1.0
ND2 D:ASN215 4.6 8.2 1.0
NE2 D:HIS220 4.7 8.2 1.0
C1 D:XLS397 4.7 36.8 1.0
C5 D:XLS397 4.7 34.6 1.0

Reference:

J.Jenkins, J.Janin, F.Rey, M.Chiadmi, H.Van Tilbeurgh, I.Lasters, M.De Maeyer, D.Van Belle, S.J.Wodak, M.Lauwereys, P.Stanssens, G.Matthyssens, A.M.Lambeir. Protein Engineering of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography and Site-Directed Mutagenesis of Metal Binding Sites. Biochemistry V. 31 5449 1992.
ISSN: ISSN 0006-2960
PubMed: 1610791
DOI: 10.1021/BI00139A005
Page generated: Mon Sep 30 09:28:16 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy