Magnesium in PDB 5xnx: Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis

Enzymatic activity of Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis

All present enzymatic activity of Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis:
2.7.6.5; 3.1.7.2;

Protein crystallography data

The structure of Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis, PDB code: 5xnx was solved by B.Singal, A.M.Balakrishna, M.S.S.Manimekalai, W.Nartey, G.Gruber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.02 / 3.70
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 161.710, 161.710, 75.560, 90.00, 90.00, 120.00
R / Rfree (%) 35 / 36.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis (pdb code 5xnx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis, PDB code: 5xnx:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 5xnx

Go back to Magnesium Binding Sites List in 5xnx
Magnesium binding site 1 out of 3 in the Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:53.6
occ:1.00
 OD2 A:ASP145 3.3 91.0 1.0
CB A:ASP81 3.5 0.4 1.0
NE2 A:HIS56 3.5 99.4 1.0
CD2 A:HIS56 3.8 0.5 1.0
NE2 A:HIS80 4.0 0.3 1.0
CD2 A:HIS80 4.2 0.9 1.0
CG A:ASP145 4.2 90.3 1.0
OD1 A:ASP145 4.3 90.8 1.0
CA A:ASP81 4.7 0.9 1.0
CE1 A:HIS56 4.8 98.9 1.0

Magnesium binding site 2 out of 3 in 5xnx

Go back to Magnesium Binding Sites List in 5xnx
Magnesium binding site 2 out of 3 in the Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:75.0
occ:1.00
 OD2 C:ASP81 2.9 1.0 1.0
OD1 C:ASP145 3.0 97.1 1.0
OD2 C:ASP145 3.2 96.5 1.0
OD1 C:ASP81 3.3 0.1 1.0
CG C:ASP81 3.5 0.7 1.0
CG C:ASP145 3.5 96.2 1.0
NE2 C:HIS56 3.6 0.6 1.0
CD2 C:HIS56 4.1 0.1 1.0
ND2 C:ASN149 4.5 98.1 1.0
CE1 C:HIS56 4.7 0.0 1.0
CB C:ASP145 4.9 94.9 1.0
CB C:ASP81 5.0 0.5 1.0

Magnesium binding site 3 out of 3 in 5xnx

Go back to Magnesium Binding Sites List in 5xnx
Magnesium binding site 3 out of 3 in the Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystallographic Structure of the Enzymatically Active N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:73.2
occ:1.00
 OD2 D:ASP81 2.5 0.3 1.0
OD1 D:ASP145 3.1 91.7 1.0
NE2 D:HIS56 3.2 99.2 1.0
OD2 D:ASP145 3.2 92.1 1.0
CG D:ASP81 3.5 0.6 1.0
CG D:ASP145 3.5 91.5 1.0
CD2 D:HIS56 3.6 0.3 1.0
OD1 D:ASP81 3.7 0.9 1.0
CE1 D:HIS56 3.9 98.9 1.0
ND2 D:ASN149 4.1 95.3 1.0
CG D:HIS56 4.4 0.7 1.0
ND1 D:HIS56 4.6 99.8 1.0
OD1 D:ASN149 4.8 95.6 1.0
CB D:ASP81 4.9 0.1 1.0
CG D:ASN149 4.9 95.2 1.0

Reference:

B.Singal, A.M.Balakrishna, W.Nartey, M.S.S.Manimekalai, J.Jeyakanthan, G.Gruber. Crystallographic and Solution Structure of the N-Terminal Domain of the Rel Protein From Mycobacterium Tuberculosis Febs Lett. V. 591 2323 2017.
ISSN: ISSN 1873-3468
PubMed: 28672070
DOI: 10.1002/1873-3468.12739
Page generated: Mon Dec 14 22:10:02 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy