Magnesium in PDB 5xon: Rna Polymerase II Elongation Complex Bound with SPT4/5 and Tfiis

Enzymatic activity of Rna Polymerase II Elongation Complex Bound with SPT4/5 and Tfiis

All present enzymatic activity of Rna Polymerase II Elongation Complex Bound with SPT4/5 and Tfiis:
2.7.7.6;

Other elements in 5xon:

The structure of Rna Polymerase II Elongation Complex Bound with SPT4/5 and Tfiis also contains other interesting chemical elements:

Zinc (Zn) 10 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rna Polymerase II Elongation Complex Bound with SPT4/5 and Tfiis (pdb code 5xon). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Polymerase II Elongation Complex Bound with SPT4/5 and Tfiis, PDB code: 5xon:

Magnesium binding site 1 out of 1 in 5xon

Go back to Magnesium Binding Sites List in 5xon
Magnesium binding site 1 out of 1 in the Rna Polymerase II Elongation Complex Bound with SPT4/5 and Tfiis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Polymerase II Elongation Complex Bound with SPT4/5 and Tfiis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1803

b:54.5
occ:1.00
O3' P:U10 2.2 66.2 1.0
OD1 A:ASP486 2.3 66.6 1.0
OD1 A:ASP482 2.3 65.2 1.0
OD1 A:ASP484 2.4 65.1 1.0
OD2 A:ASP486 2.5 68.4 1.0
CG A:ASP486 2.7 62.5 1.0
CG A:ASP482 3.3 64.0 1.0
CG A:ASP484 3.4 66.2 1.0
C3' P:U10 3.4 58.1 1.0
OD2 A:ASP484 3.5 83.6 1.0
O2' P:U10 3.6 69.2 1.0
OD2 A:ASP482 3.7 92.7 1.0
C4' P:U10 3.8 55.9 1.0
O A:ASP482 4.0 65.8 1.0
C2' P:U10 4.1 62.7 1.0
CB A:ASP486 4.2 53.1 1.0
C5' P:U10 4.6 53.2 1.0
N A:ASP482 4.6 49.9 1.0
C A:ASP482 4.7 53.5 1.0
CB A:ASP482 4.7 52.2 1.0
N A:ASP486 4.7 61.0 1.0
CB A:ASP484 4.8 59.9 1.0
CA A:ASP486 4.9 61.7 1.0
CA A:ASP482 4.9 55.0 1.0
N A:ASP484 4.9 50.1 1.0
C A:ASP484 5.0 52.1 1.0

Reference:

H.Ehara, T.Yokoyama, H.Shigematsu, S.Yokoyama, M.Shirouzu, S.I.Sekine. Structure of the Complete Elongation Complex of Rna Polymerase II with Basal Factors Science V. 357 921 2017.
ISSN: ESSN 1095-9203
PubMed: 28775211
DOI: 10.1126/SCIENCE.AAN8552
Page generated: Mon Dec 14 22:11:19 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy