Magnesium in PDB 5xt2: Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121

The structure of Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121, PDB code: 5xt2 was solved by Y.Nishizono, T.Hisano, Y.Shiro, H.Sawai, G.S.A.Wright, A.Saeki, T.Hikima, H.Nakamura, M.Yamamoto, S.V.Antonyuk, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.51 / 2.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	76.722, 137.910, 142.276, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 24.9

The binding sites of Magnesium atom in the Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121 (pdb code 5xt2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121, PDB code: 5xt2:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:54.0 occ:1.00 OD1 A:ASP12 2.1 22.1 1.0 O A:HOH403 2.1 11.9 1.0 O A:HOH409 2.1 22.8 1.0 O A:HOH407 2.2 12.6 1.0 OD2 A:ASP55 2.2 17.5 1.0 CG A:ASP12 2.9 22.1 1.0 OD2 A:ASP12 3.1 20.9 1.0 CG A:ASP55 3.2 16.8 1.0 OD1 A:ASP55 3.7 16.1 1.0 OD1 A:ASP11 4.0 38.2 1.0 O A:ARG57 4.2 18.2 1.0 CB A:ASP12 4.3 22.3 1.0 N A:ASP12 4.4 21.2 1.0 CB A:ASP55 4.4 17.1 1.0 C A:ARG57 4.6 17.6 1.0 N A:ASP13 4.7 21.6 1.0 CA A:ASP12 4.8 22.4 1.0 N A:MET58 4.9 18.0 1.0 CA A:MET58 4.9 23.8 1.0 CD A:PRO59 4.9 21.4 1.0 CG A:ASP11 4.9 31.1 1.0 C A:ASP12 5.0 22.6 1.0

Magnesium binding site 2 out of 5 in the Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:31.8 occ:1.00 OD1 B:ASP12 2.0 50.6 1.0 O B:HOH407 2.0 30.1 1.0 O B:HOH410 2.1 33.6 1.0 OD2 B:ASP55 2.1 63.6 1.0 CG B:ASP12 3.0 30.6 1.0 CG B:ASP55 3.0 30.1 1.0 OD2 B:ASP12 3.2 30.1 1.0 OD1 B:ASP55 3.5 41.3 1.0 O B:ARG57 3.8 47.0 1.0 OD2 B:ASP11 3.9 40.6 1.0 CB B:ASP55 4.1 30.9 1.0 C B:ARG57 4.3 32.5 1.0 CB B:ASP12 4.3 30.9 1.0 N B:ASP12 4.3 30.8 1.0 N B:MET58 4.6 33.3 1.0 N B:ASP13 4.8 28.2 1.0 CA B:ASP12 4.8 30.6 1.0 CA B:MET58 4.8 34.0 1.0 O1 B:FMT302 4.8 43.0 1.0 CG B:ASP11 4.8 29.0 1.0 CD B:PRO59 4.9 33.6 1.0 O B:HOH402 5.0 24.8 1.0

Magnesium binding site 3 out of 5 in the Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:51.0 occ:1.00 O C:HOH417 2.1 45.2 1.0 OD2 C:ASP55 2.1 86.6 1.0 O C:HOH404 2.1 45.2 1.0 OD1 C:ASP12 2.2 84.3 1.0 O C:HOH421 2.2 56.0 1.0 CG C:ASP12 3.1 72.1 1.0 CG C:ASP55 3.3 75.2 1.0 OD2 C:ASP12 3.3 82.1 1.0 OD2 C:ASP11 4.0 56.1 1.0 OD1 C:ASP55 4.0 75.9 1.0 CB C:ASP55 4.3 56.9 1.0 CB C:ASP12 4.5 51.5 1.0 O C:ARG57 4.6 60.5 1.0 N C:ASP12 4.6 44.9 1.0 N C:ASP13 4.7 47.4 1.0 CG C:ASP11 4.8 46.6 1.0 CB C:ASP13 4.8 49.1 1.0 C C:ARG57 5.0 63.9 1.0 CA C:ASP12 5.0 47.3 1.0

Magnesium binding site 4 out of 5 in the Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:53.0 occ:1.00 OD2 D:ASP55 2.2 91.1 1.0 O D:HOH401 2.2 59.2 1.0 OD1 D:ASP12 2.2 88.7 1.0 O D:HOH418 2.2 45.5 1.0 O D:HOH419 2.2 53.3 1.0 CG D:ASP55 3.3 75.9 1.0 CG D:ASP12 3.3 82.2 1.0 OD1 D:ASP11 3.4 79.3 1.0 OD2 D:ASP12 3.8 84.8 1.0 OD1 D:ASP55 4.0 76.6 1.0 CB D:ASP55 4.3 61.3 1.0 O D:ARG57 4.4 77.3 1.0 N D:ASP12 4.5 66.6 1.0 CG D:ASP11 4.5 68.3 1.0 N D:ASP13 4.6 57.6 1.0 CB D:ASP12 4.6 80.0 1.0 NZ D:LYS105 4.7 51.0 1.0 CB D:ASP13 4.8 53.9 1.0 CE D:MET58 4.8 78.3 1.0 CA D:ASP12 4.9 72.5 1.0 C D:ASP12 5.0 66.0 1.0 OD2 D:ASP11 5.0 70.1 1.0

Magnesium binding site 5 out of 5 in the Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structures of Full-Length Fixj From B. Japonicum Crystallized in Space Group P212121 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg301 b:48.8 occ:1.00 OD1 E:ASP12 2.2 0.1 1.0 OD2 E:ASP12 2.8 95.0 1.0 CG E:ASP12 2.9 94.0 1.0 OD2 E:ASP55 2.9 73.1 1.0 O D:HOH416 3.2 46.9 1.0 CG E:ASP55 3.8 70.6 1.0 O E:ARG57 4.0 78.1 1.0 OD1 E:ASP11 4.3 86.4 1.0 CB E:ASP12 4.4 76.7 1.0 OD1 E:ASP55 4.4 70.1 1.0 CD E:PRO59 4.5 88.3 1.0 O E:HOH413 4.6 43.2 1.0 N E:ASP12 4.7 77.8 1.0 C E:ARG57 4.7 76.9 1.0 CB E:ASP55 4.8 70.3 1.0 OD1 D:ASN188 4.9 75.9 1.0 CA E:ASP12 5.0 75.2 1.0

G.S.A.Wright, A.Saeki, T.Hikima, Y.Nishizono, T.Hisano, M.Kamaya, K.Nukina, H.Nishitani, H.Nakamura, M.Yamamoto, S.V.Antonyuk, S.S.Hasnain, Y.Shiro, H.Sawai. Architecture of the Complete Oxygen-Sensing Fixl-Fixj Two-Component Signal Transduction System. Sci Signal V. 11 2018.
ISSN: ESSN 1937-9145
PubMed: 29636388
DOI: 10.1126/SCISIGNAL.AAQ0825