Magnesium in PDB 5xxx: Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C

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>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Magnesium atom in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C (pdb code 5xxx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 18 binding sites of Magnesium where determined in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C, PDB code: 5xxx:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:0.0 occ:1.00 O A:HOH601 2.1 0.0 1.0 O A:HOH602 2.3 0.0 1.0 O A:HOH603 2.3 0.0 1.0 O A:HOH604 2.4 0.0 1.0 O1G A:GTP501 2.5 0.0 1.0 O1B A:GTP501 3.2 0.0 1.0 PG A:GTP501 3.7 0.0 1.0 O3B A:GTP501 3.7 0.0 1.0 PB A:GTP501 3.8 0.0 1.0 CG A:GLN11 3.9 0.0 1.0 O3A A:GTP501 4.1 0.0 1.0 OE1 A:GLN11 4.2 0.0 1.0 N A:GLN11 4.3 0.0 1.0 OD2 A:ASP69 4.4 0.0 1.0 O2A A:GTP501 4.4 0.0 1.0 OD1 A:ASP98 4.4 0.0 1.0 OD1 A:ASP69 4.4 0.0 1.0 O2G A:GTP501 4.5 0.0 1.0 CD A:GLN11 4.5 0.0 1.0 CB A:GLN11 4.6 0.0 1.0 PA A:GTP501 4.8 0.0 1.0 CA A:GLN11 4.8 0.0 1.0 CG A:ASP69 4.8 0.0 1.0 O3G A:GTP501 4.9 0.0 1.0 OD2 A:ASP98 4.9 0.0 1.0 CG A:ASP98 5.0 0.0 1.0

Magnesium binding site 2 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:0.0 occ:1.00 O2B B:G2P501 2.4 0.0 1.0 O2G B:G2P501 2.5 0.0 1.0 PG B:G2P501 3.5 0.0 1.0 PB B:G2P501 3.7 0.0 1.0 O3B B:G2P501 3.8 0.0 1.0 NE2 B:GLN11 3.9 0.0 1.0 O1G B:G2P501 3.9 0.0 1.0 CB B:GLN11 3.9 0.0 1.0 OD1 B:ASP69 4.1 0.0 1.0 C3A B:G2P501 4.2 0.0 1.0 N B:GLN11 4.3 0.0 1.0 O2A B:G2P501 4.6 0.0 1.0 CA B:GLN11 4.7 0.0 1.0 OD2 B:ASP69 4.8 0.0 1.0 CG2 B:THR74 4.8 0.0 1.0 CG B:ASP69 4.9 0.0 1.0 CD B:GLN11 4.9 0.0 1.0 O3G B:G2P501 4.9 0.0 1.0 PA B:G2P501 4.9 0.0 1.0 CG B:GLN11 4.9 0.0 1.0 O I:ASN249 5.0 0.0 1.0

Magnesium binding site 3 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:0.0 occ:1.00 O C:HOH601 2.1 0.0 1.0 O C:HOH602 2.3 0.0 1.0 O C:HOH603 2.3 0.0 1.0 O C:HOH604 2.4 0.0 1.0 O1G C:GTP501 2.5 0.0 1.0 O1B C:GTP501 3.2 0.0 1.0 PG C:GTP501 3.7 0.0 1.0 O3B C:GTP501 3.7 0.0 1.0 PB C:GTP501 3.8 0.0 1.0 CG C:GLN11 3.9 0.0 1.0 O3A C:GTP501 4.1 0.0 1.0 OE1 C:GLN11 4.2 0.0 1.0 N C:GLN11 4.3 0.0 1.0 OD2 C:ASP69 4.4 0.0 1.0 O2A C:GTP501 4.4 0.0 1.0 OD1 C:ASP98 4.4 0.0 1.0 OD1 C:ASP69 4.4 0.0 1.0 O2G C:GTP501 4.5 0.0 1.0 CD C:GLN11 4.5 0.0 1.0 CB C:GLN11 4.6 0.0 1.0 PA C:GTP501 4.8 0.0 1.0 CA C:GLN11 4.8 0.0 1.0 CG C:ASP69 4.8 0.0 1.0 O3G C:GTP501 4.9 0.0 1.0 OD2 C:ASP98 4.9 0.0 1.0 CG C:ASP98 5.0 0.0 1.0

Magnesium binding site 4 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:0.0 occ:1.00 O2B D:G2P501 2.4 0.0 1.0 O2G D:G2P501 2.5 0.0 1.0 PG D:G2P501 3.5 0.0 1.0 PB D:G2P501 3.7 0.0 1.0 O3B D:G2P501 3.8 0.0 1.0 NE2 D:GLN11 3.9 0.0 1.0 O1G D:G2P501 3.9 0.0 1.0 CB D:GLN11 3.9 0.0 1.0 OD1 D:ASP69 4.1 0.0 1.0 C3A D:G2P501 4.2 0.0 1.0 N D:GLN11 4.3 0.0 1.0 O2A D:G2P501 4.6 0.0 1.0 CA D:GLN11 4.7 0.0 1.0 OD2 D:ASP69 4.8 0.0 1.0 CG2 D:THR74 4.8 0.0 1.0 CG D:ASP69 4.9 0.0 1.0 CD D:GLN11 4.9 0.0 1.0 O3G D:G2P501 4.9 0.0 1.0 PA D:G2P501 4.9 0.0 1.0 CG D:GLN11 4.9 0.0 1.0 O G:ASN249 5.0 0.0 1.0

Magnesium binding site 5 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:0.0 occ:1.00 O E:HOH601 2.1 0.0 1.0 O E:HOH602 2.3 0.0 1.0 O E:HOH603 2.3 0.0 1.0 O E:HOH604 2.4 0.0 1.0 O1G E:GTP501 2.4 0.0 1.0 O1B E:GTP501 3.2 0.0 1.0 PG E:GTP501 3.7 0.0 1.0 O3B E:GTP501 3.7 0.0 1.0 PB E:GTP501 3.8 0.0 1.0 CG E:GLN11 3.9 0.0 1.0 O3A E:GTP501 4.1 0.0 1.0 OE1 E:GLN11 4.2 0.0 1.0 N E:GLN11 4.3 0.0 1.0 OD2 E:ASP69 4.4 0.0 1.0 O2A E:GTP501 4.4 0.0 1.0 OD1 E:ASP98 4.4 0.0 1.0 OD1 E:ASP69 4.4 0.0 1.0 O2G E:GTP501 4.5 0.0 1.0 CD E:GLN11 4.5 0.0 1.0 CB E:GLN11 4.6 0.0 1.0 PA E:GTP501 4.8 0.0 1.0 CA E:GLN11 4.8 0.0 1.0 CG E:ASP69 4.8 0.0 1.0 O3G E:GTP501 4.9 0.0 1.0 OD2 E:ASP98 4.9 0.0 1.0 CG E:ASP98 5.0 0.0 1.0

Magnesium binding site 6 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:0.0 occ:1.00 O2B F:G2P501 2.4 0.0 1.0 O2G F:G2P501 2.5 0.0 1.0 PG F:G2P501 3.5 0.0 1.0 PB F:G2P501 3.7 0.0 1.0 O3B F:G2P501 3.8 0.0 1.0 NE2 F:GLN11 3.9 0.0 1.0 O1G F:G2P501 3.9 0.0 1.0 CB F:GLN11 3.9 0.0 1.0 OD1 F:ASP69 4.1 0.0 1.0 C3A F:G2P501 4.2 0.0 1.0 N F:GLN11 4.3 0.0 1.0 O2A F:G2P501 4.6 0.0 1.0 CA F:GLN11 4.7 0.0 1.0 OD2 F:ASP69 4.8 0.0 1.0 CG2 F:THR74 4.8 0.0 1.0 CG F:ASP69 4.9 0.0 1.0 CD F:GLN11 4.9 0.0 1.0 O3G F:G2P501 4.9 0.0 1.0 PA F:G2P501 4.9 0.0 1.0 CG F:GLN11 4.9 0.0 1.0 O K:ASN249 5.0 0.0 1.0

Magnesium binding site 7 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg502 b:0.0 occ:1.00 O G:HOH601 2.1 0.0 1.0 O G:HOH602 2.3 0.0 1.0 O G:HOH603 2.3 0.0 1.0 O G:HOH604 2.4 0.0 1.0 O1G G:GTP501 2.4 0.0 1.0 O1B G:GTP501 3.2 0.0 1.0 PG G:GTP501 3.7 0.0 1.0 O3B G:GTP501 3.7 0.0 1.0 PB G:GTP501 3.8 0.0 1.0 CG G:GLN11 3.9 0.0 1.0 O3A G:GTP501 4.1 0.0 1.0 OE1 G:GLN11 4.2 0.0 1.0 N G:GLN11 4.3 0.0 1.0 OD2 G:ASP69 4.4 0.0 1.0 O2A G:GTP501 4.4 0.0 1.0 OD1 G:ASP98 4.4 0.0 1.0 OD1 G:ASP69 4.4 0.0 1.0 O2G G:GTP501 4.5 0.0 1.0 CD G:GLN11 4.5 0.0 1.0 CB G:GLN11 4.6 0.0 1.0 PA G:GTP501 4.8 0.0 1.0 CA G:GLN11 4.8 0.0 1.0 CG G:ASP69 4.8 0.0 1.0 O3G G:GTP501 4.9 0.0 1.0 OD2 G:ASP98 4.9 0.0 1.0 CG G:ASP98 4.9 0.0 1.0

Magnesium binding site 8 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:0.0 occ:1.00 O2B H:G2P501 2.4 0.0 1.0 O2G H:G2P501 2.5 0.0 1.0 PG H:G2P501 3.5 0.0 1.0 PB H:G2P501 3.7 0.0 1.0 O3B H:G2P501 3.8 0.0 1.0 NE2 H:GLN11 3.9 0.0 1.0 O1G H:G2P501 3.9 0.0 1.0 CB H:GLN11 3.9 0.0 1.0 OD1 H:ASP69 4.2 0.0 1.0 C3A H:G2P501 4.2 0.0 1.0 N H:GLN11 4.3 0.0 1.0 O2A H:G2P501 4.6 0.0 1.0 CA H:GLN11 4.7 0.0 1.0 OD2 H:ASP69 4.8 0.0 1.0 CG2 H:THR74 4.8 0.0 1.0 CG H:ASP69 4.9 0.0 1.0 CD H:GLN11 4.9 0.0 1.0 O3G H:G2P501 4.9 0.0 1.0 PA H:G2P501 4.9 0.0 1.0 CG H:GLN11 4.9 0.0 1.0

Magnesium binding site 9 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg502 b:0.0 occ:1.00 O I:HOH601 2.1 0.0 1.0 O I:HOH602 2.3 0.0 1.0 O I:HOH603 2.3 0.0 1.0 O I:HOH604 2.4 0.0 1.0 O1G I:GTP501 2.4 0.0 1.0 O1B I:GTP501 3.2 0.0 1.0 PG I:GTP501 3.7 0.0 1.0 O3B I:GTP501 3.7 0.0 1.0 PB I:GTP501 3.8 0.0 1.0 CG I:GLN11 3.9 0.0 1.0 O3A I:GTP501 4.1 0.0 1.0 OE1 I:GLN11 4.2 0.0 1.0 N I:GLN11 4.3 0.0 1.0 OD2 I:ASP69 4.4 0.0 1.0 O2A I:GTP501 4.4 0.0 1.0 OD1 I:ASP98 4.4 0.0 1.0 OD1 I:ASP69 4.4 0.0 1.0 O2G I:GTP501 4.5 0.0 1.0 CD I:GLN11 4.5 0.0 1.0 CB I:GLN11 4.6 0.0 1.0 PA I:GTP501 4.8 0.0 1.0 CA I:GLN11 4.8 0.0 1.0 CG I:ASP69 4.8 0.0 1.0 O3G I:GTP501 4.9 0.0 1.0 OD2 I:ASP98 4.9 0.0 1.0 CG I:ASP98 5.0 0.0 1.0

Magnesium binding site 10 out of 18 in the Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Gmpcpp-Microtubule Complexed with Nucleotide-Free KIF5C within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg502 b:0.0 occ:1.00 O2B J:G2P501 2.4 0.0 1.0 O2G J:G2P501 2.5 0.0 1.0 PG J:G2P501 3.5 0.0 1.0 PB J:G2P501 3.7 0.0 1.0 O3B J:G2P501 3.8 0.0 1.0 NE2 J:GLN11 3.9 0.0 1.0 O1G J:G2P501 3.9 0.0 1.0 CB J:GLN11 3.9 0.0 1.0 OD1 J:ASP69 4.1 0.0 1.0 C3A J:G2P501 4.2 0.0 1.0 N J:GLN11 4.3 0.0 1.0 O2A J:G2P501 4.6 0.0 1.0 CA J:GLN11 4.7 0.0 1.0 OD2 J:ASP69 4.8 0.0 1.0 CG2 J:THR74 4.8 0.0 1.0 CG J:ASP69 4.9 0.0 1.0 CD J:GLN11 4.9 0.0 1.0 O3G J:G2P501 4.9 0.0 1.0 PA J:G2P501 4.9 0.0 1.0 CG J:GLN11 4.9 0.0 1.0

T.Shima, M.Morikawa, J.Kaneshiro, T.Kambara, S.Kamimura, T.Yagi, H.Iwamoto, S.Uemura, H.Shigematsu, M.Shirouzu, T.Ichimura, T.M.Watanabe, R.Nitta, Y.Okada, N.Hirokawa. Kinesin-Binding-Triggered Conformation Switching of Microtubules Contributes to Polarized Transport J. Cell Biol. V. 217 4164 2018.
ISSN: ESSN 1540-8140
PubMed: 30297389
DOI: 10.1083/JCB.201711178