Magnesium in PDB 5xz8: Crystal Structure of Phosphofructokinase From Staphylococcus Aureus in Complex with Adenylylimidodiphosphate (the Atp Analog) and Fructose- 6-Phosphate

Enzymatic activity of Crystal Structure of Phosphofructokinase From Staphylococcus Aureus in Complex with Adenylylimidodiphosphate (the Atp Analog) and Fructose- 6-Phosphate

All present enzymatic activity of Crystal Structure of Phosphofructokinase From Staphylococcus Aureus in Complex with Adenylylimidodiphosphate (the Atp Analog) and Fructose- 6-Phosphate:
2.7.1.11;

Protein crystallography data

The structure of Crystal Structure of Phosphofructokinase From Staphylococcus Aureus in Complex with Adenylylimidodiphosphate (the Atp Analog) and Fructose- 6-Phosphate, PDB code: 5xz8 was solved by C.L.Wang, T.Tian, J.Y.Zang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	66.53 / 1.95
*Space group*	I 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	75.360, 79.830, 120.390, 90.00, 90.00, 90.00
*R / R_free (%)*	21 / 26.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Phosphofructokinase From Staphylococcus Aureus in Complex with Adenylylimidodiphosphate (the Atp Analog) and Fructose- 6-Phosphate (pdb code 5xz8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Phosphofructokinase From Staphylococcus Aureus in Complex with Adenylylimidodiphosphate (the Atp Analog) and Fructose- 6-Phosphate, PDB code: 5xz8:

Magnesium binding site 1 out of 1 in 5xz8

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Magnesium Binding Sites List in 5xz8

Magnesium binding site 1 out of 1 in the Crystal Structure of Phosphofructokinase From Staphylococcus Aureus in Complex with Adenylylimidodiphosphate (the Atp Analog) and Fructose- 6-Phosphate

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Phosphofructokinase From Staphylococcus Aureus in Complex with Adenylylimidodiphosphate (the Atp Analog) and Fructose- 6-Phosphate within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg405 b:28.7 occ:1.00	O	A:HOH611	2.0	44.0	1.0
	O	A:HOH643	2.2	29.9	1.0
	O1B	A:ANP406	2.3	25.9	1.0
	O1G	A:ANP406	2.4	25.3	1.0
	O2A	A:ANP406	2.4	29.6	1.0
	PB	A:ANP406	3.2	25.1	1.0
	O3A	A:ANP406	3.3	27.2	1.0
	PA	A:ANP406	3.4	28.3	1.0
	PG	A:ANP406	3.7	27.9	1.0
	N3B	A:ANP406	3.9	24.7	1.0
	N	A:GLY104	4.1	27.3	1.0
	O	A:HOH563	4.4	33.1	1.0
	CA	A:GLY104	4.5	24.0	1.0
	O5'	A:ANP406	4.5	26.9	1.0
	O1A	A:ANP406	4.6	28.9	1.0
	O2B	A:ANP406	4.6	22.4	1.0
	O2G	A:ANP406	4.6	26.2	1.0
	O3G	A:ANP406	4.8	25.9	1.0
	NE	A:ARG173	4.8	29.6	1.0
	CZ	A:ARG173	4.9	30.1	1.0
	O	A:HOH604	4.9	55.3	1.0
	CB	A:ASP103	4.9	34.9	1.0

Reference:

T.Tian, C.L.Wang, M.H.Wu, X.Zhang, J.Y.Zang. Structural Insights Into the Regulation of Staphylococcus Aureus Phosphofructokinase By Tetramer-Dimer Conversion. Biochemistry V. 57 4252 2018.
ISSN: ISSN 1520-4995
PubMed: 29940104
DOI: 10.1021/ACS.BIOCHEM.8B00028

Page generated: Mon Sep 30 10:39:48 2024

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