Magnesium in PDB 5y1x: Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin

Protein crystallography data

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin, PDB code: 5y1x was solved by A.K.Marapaka, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.66 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.723, 109.623, 113.134, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 22.6

Other elements in 5y1x:

The structure of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin (pdb code 5y1x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin, PDB code: 5y1x:

Magnesium binding site 1 out of 1 in 5y1x

Go back to Magnesium Binding Sites List in 5y1x
Magnesium binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1102

b:41.3
occ:1.00
O A:HOH1740 1.8 27.3 0.5
O A:HOH1560 2.0 24.6 0.5
O A:HOH1776 2.0 31.1 0.5
O A:HOH1550 2.0 26.9 0.5
O A:HOH1507 2.1 31.7 0.5
O A:HOH1762 2.1 63.6 1.0
OE2 A:GLU957 3.8 31.0 1.0
O A:HOH1526 3.9 37.3 1.0
ND2 A:ASN992 3.9 29.1 1.0
O A:HOH1686 4.1 44.3 1.0
OD2 A:ASP995 4.1 32.0 1.0
O A:HOH1782 4.2 35.3 1.0
O A:HOH1340 4.4 31.9 1.0
O A:HOH1670 4.5 42.9 1.0
O A:HOH1564 4.7 30.4 1.0
CD A:GLU957 4.7 33.5 1.0
CB A:ASN992 4.9 24.8 1.0
CG A:ASN992 4.9 29.3 1.0
CE A:LYS311 4.9 39.8 1.0

Reference:

A.K.Marapaka, A.Addlagatta. Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin To Be Published.
Page generated: Mon Dec 14 22:12:53 2020

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