Magnesium in PDB 5y6z: Crystal Structure of the Coxsackievirus A16 Polymerase Elongation Complex

The structure of Crystal Structure of the Coxsackievirus A16 Polymerase Elongation Complex, PDB code: 5y6z was solved by P.Bi, B.Shu, P.Gong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.83 / 2.50
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	93.724, 93.724, 167.512, 90.00, 90.00, 120.00
R / Rfree (%)	21.8 / 25.9

The binding sites of Magnesium atom in the Crystal Structure of the Coxsackievirus A16 Polymerase Elongation Complex (pdb code 5y6z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Coxsackievirus A16 Polymerase Elongation Complex, PDB code: 5y6z:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Coxsackievirus A16 Polymerase Elongation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Coxsackievirus A16 Polymerase Elongation Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg501 b:57.5 occ:0.89 OD1 E:ASP330 2.3 48.3 1.0 OP1 G:A701 3.0 48.3 1.0 O G:HOH915 3.2 52.6 1.0 CG E:ASP330 3.3 43.3 1.0 OD2 E:ASP330 3.6 45.5 1.0 OD1 E:ASP233 3.7 60.2 1.0 OD2 E:ASP329 3.9 58.4 1.0 OD1 E:ASP329 3.9 50.8 1.0 O3' G:A701 4.1 38.6 1.0 P G:A701 4.1 47.2 1.0 OD2 E:ASP233 4.1 62.0 1.0 CG E:ASP233 4.2 62.5 1.0 CG E:ASP329 4.2 52.4 1.0 O5' G:A701 4.4 41.2 1.0 C5' G:A701 4.4 37.8 1.0 CB E:ASP330 4.6 39.0 1.0 O E:HOH712 4.6 38.0 1.0 OP2 G:A701 4.7 44.4 1.0 C3' G:A701 4.7 40.2 1.0 N E:ASP330 4.9 37.8 1.0 CA E:ASP330 4.9 38.3 1.0

P.Bi, B.Shu, P.Gong. Crystal Structure of the Coxsackievirus A16 Rna-Dependent Rna Polymerase Elongation Complex Reveals Novel Features in Motif A Dynamics Virol Sin V. 32 548 2017.
ISSN: ISSN 1995-820X
PubMed: 29164396
DOI: 10.1007/S12250-017-4066-8