Magnesium in PDB 5yd6: Crystal Structure of Pg-Bound NURR1-Lbd

The structure of Crystal Structure of Pg-Bound NURR1-Lbd, PDB code: 5yd6 was solved by R.Sreekanth, H.S.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.34
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	85.950, 94.080, 135.650, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 26.9

The binding sites of Magnesium atom in the Crystal Structure of Pg-Bound NURR1-Lbd (pdb code 5yd6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Pg-Bound NURR1-Lbd, PDB code: 5yd6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Pg-Bound NURR1-Lbd


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pg-Bound NURR1-Lbd within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:58.6 occ:1.00 O A:HOH757 2.6 42.5 1.0 OXT A:PHE598 3.9 48.6 1.0 O A:PHE598 4.0 52.3 1.0 C A:PHE598 4.4 50.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Pg-Bound NURR1-Lbd


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Pg-Bound NURR1-Lbd within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:63.8 occ:1.00 OXT B:PHE598 4.0 45.8 1.0 O B:HOH706 4.1 51.8 1.0 O B:PHE598 4.1 48.8 1.0 C B:PHE598 4.5 47.5 1.0 O B:LEU593 4.8 44.4 1.0 CD2 B:LEU593 4.9 44.9 1.0

S.Rajan, H.T.Toh, K.H.Lim, H.S.Yoon. Structure of NURR1 Bound to Cyclopentenone Prostaglandin A2 and Its Mechanism of Action in Ameliorating Dopaminergic Neurodegeneration in Drosophila To Be Published.