Magnesium in PDB 5yjh: Structural Insights Into Periostin Functions
Protein crystallography data
The structure of Structural Insights Into Periostin Functions, PDB code: 5yjh
was solved by
H.Liu,
J.Liu,
F.Xu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
44.04 /
2.96
|
|
Space group
|
P 61 2 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.529,
105.529,
330.342,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
21.3 /
24.2
|
Other elements in 5yjh:
The structure of Structural Insights Into Periostin Functions also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structural Insights Into Periostin Functions
(pdb code 5yjh). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the
Structural Insights Into Periostin Functions, PDB code: 5yjh:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Magnesium binding site 1 out
of 9 in 5yjh
Go back to
Magnesium Binding Sites List in 5yjh
Magnesium binding site 1 out
of 9 in the Structural Insights Into Periostin Functions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structural Insights Into Periostin Functions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg720
b:55.2
occ:1.00
|
OG1
|
A:THR104
|
2.8
|
46.0
|
1.0
|
|
O
|
A:ILE217
|
2.9
|
37.4
|
1.0
|
|
N
|
A:ASP99
|
3.0
|
42.7
|
1.0
|
|
O
|
A:ASP99
|
3.5
|
43.6
|
1.0
|
|
CB
|
A:ILE98
|
3.7
|
44.3
|
1.0
|
|
CA
|
A:ILE98
|
3.7
|
39.1
|
1.0
|
|
CG2
|
A:THR104
|
3.8
|
44.5
|
1.0
|
|
CB
|
A:THR104
|
3.8
|
45.6
|
1.0
|
|
CD1
|
A:ILE107
|
3.8
|
41.5
|
1.0
|
|
C
|
A:ILE98
|
3.9
|
44.5
|
1.0
|
|
CA
|
A:ASP99
|
3.9
|
41.6
|
1.0
|
|
CA
|
A:ALA218
|
3.9
|
46.0
|
1.0
|
|
C
|
A:ILE217
|
3.9
|
39.7
|
1.0
|
|
C
|
A:ASP99
|
4.0
|
43.7
|
1.0
|
|
CG2
|
A:ILE98
|
4.0
|
48.0
|
1.0
|
|
CB
|
A:ALA218
|
4.1
|
40.8
|
1.0
|
|
CB
|
A:ASP99
|
4.1
|
39.3
|
1.0
|
|
N
|
A:ALA218
|
4.3
|
43.6
|
1.0
|
|
CA
|
A:THR104
|
4.4
|
50.6
|
1.0
|
|
OE1
|
A:GLN216
|
4.5
|
50.7
|
1.0
|
|
O
|
A:HIS100
|
4.6
|
48.1
|
1.0
|
|
N
|
A:THR104
|
4.9
|
46.5
|
1.0
|
|
Magnesium binding site 2 out
of 9 in 5yjh
Go back to
Magnesium Binding Sites List in 5yjh
Magnesium binding site 2 out
of 9 in the Structural Insights Into Periostin Functions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structural Insights Into Periostin Functions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg721
b:62.0
occ:1.00
|
NH1
|
A:ARG458
|
2.8
|
44.6
|
1.0
|
|
O
|
A:GLY529
|
2.9
|
61.8
|
1.0
|
|
CD
|
A:ARG458
|
3.0
|
44.0
|
1.0
|
|
OD2
|
A:ASP530
|
3.0
|
41.3
|
1.0
|
|
O
|
A:THR617
|
3.5
|
57.6
|
1.0
|
|
CG
|
A:ASP530
|
3.6
|
48.5
|
1.0
|
|
CZ
|
A:ARG458
|
3.8
|
45.9
|
1.0
|
|
NE
|
A:ARG458
|
3.8
|
43.5
|
1.0
|
|
CG2
|
A:VAL571
|
3.9
|
51.9
|
1.0
|
|
CA
|
A:ASP530
|
4.0
|
45.5
|
1.0
|
|
C
|
A:GLY529
|
4.0
|
59.0
|
1.0
|
|
C
|
A:ASN618
|
4.1
|
50.6
|
1.0
|
|
CG
|
A:ARG458
|
4.2
|
47.8
|
1.0
|
|
CB
|
A:ASP530
|
4.2
|
44.2
|
1.0
|
|
OD1
|
A:ASP530
|
4.2
|
54.6
|
1.0
|
|
O
|
A:ASN618
|
4.3
|
53.5
|
1.0
|
|
N
|
A:GLY619
|
4.3
|
52.0
|
1.0
|
|
CA
|
A:ASN618
|
4.3
|
48.2
|
1.0
|
|
CE1
|
A:PHE460
|
4.4
|
54.0
|
1.0
|
|
N
|
A:ASP530
|
4.4
|
57.2
|
1.0
|
|
CZ
|
A:PHE460
|
4.5
|
48.9
|
1.0
|
|
C
|
A:THR617
|
4.5
|
49.7
|
1.0
|
|
CA
|
A:GLY619
|
4.7
|
53.8
|
1.0
|
|
N
|
A:ASN618
|
4.8
|
50.1
|
1.0
|
|
CB
|
A:ARG458
|
4.9
|
41.4
|
1.0
|
|
Magnesium binding site 3 out
of 9 in 5yjh
Go back to
Magnesium Binding Sites List in 5yjh
Magnesium binding site 3 out
of 9 in the Structural Insights Into Periostin Functions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structural Insights Into Periostin Functions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg722
b:51.7
occ:1.00
|
O
|
A:PRO137
|
2.5
|
51.5
|
1.0
|
|
CB
|
A:ALA110
|
3.1
|
36.4
|
1.0
|
|
OG1
|
A:THR113
|
3.1
|
48.2
|
1.0
|
|
N
|
A:THR113
|
3.1
|
51.9
|
1.0
|
|
OD1
|
A:ASN139
|
3.2
|
50.8
|
1.0
|
|
C
|
A:SER138
|
3.2
|
54.0
|
1.0
|
|
N
|
A:ASN139
|
3.4
|
56.2
|
1.0
|
|
O
|
A:SER138
|
3.5
|
50.9
|
1.0
|
|
CA
|
A:ALA110
|
3.5
|
44.0
|
1.0
|
|
CD1
|
A:TRP142
|
3.6
|
49.5
|
1.0
|
|
C
|
A:PRO137
|
3.6
|
48.8
|
1.0
|
|
CA
|
A:SER138
|
3.6
|
50.3
|
1.0
|
|
N
|
A:THR112
|
3.6
|
49.1
|
1.0
|
|
CB
|
A:THR113
|
3.7
|
49.7
|
1.0
|
|
CB
|
A:THR112
|
3.7
|
52.0
|
1.0
|
|
NE1
|
A:TRP142
|
3.9
|
47.5
|
1.0
|
|
CA
|
A:ASN139
|
3.9
|
53.6
|
1.0
|
|
C
|
A:ALA110
|
3.9
|
51.1
|
1.0
|
|
CA
|
A:THR112
|
4.0
|
53.9
|
1.0
|
|
C
|
A:THR112
|
4.0
|
53.2
|
1.0
|
|
CA
|
A:THR113
|
4.0
|
48.0
|
1.0
|
|
CG
|
A:ASN139
|
4.0
|
56.5
|
1.0
|
|
N
|
A:SER138
|
4.1
|
46.8
|
1.0
|
|
N
|
A:THR111
|
4.1
|
51.2
|
1.0
|
|
OG1
|
A:THR112
|
4.4
|
53.0
|
1.0
|
|
O
|
A:ALA110
|
4.5
|
58.8
|
1.0
|
|
C
|
A:THR111
|
4.6
|
52.9
|
1.0
|
|
CB
|
A:ASN139
|
4.6
|
57.3
|
1.0
|
|
CG
|
A:TRP142
|
4.8
|
52.9
|
1.0
|
|
CG2
|
A:THR112
|
4.8
|
49.6
|
1.0
|
|
CA
|
A:PRO137
|
4.9
|
45.9
|
1.0
|
|
N
|
A:ALA110
|
4.9
|
38.1
|
1.0
|
|
ND2
|
A:ASN139
|
5.0
|
59.8
|
1.0
|
|
CB
|
A:SER138
|
5.0
|
55.3
|
1.0
|
|
Magnesium binding site 4 out
of 9 in 5yjh
Go back to
Magnesium Binding Sites List in 5yjh
Magnesium binding site 4 out
of 9 in the Structural Insights Into Periostin Functions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structural Insights Into Periostin Functions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg723
b:83.5
occ:1.00
|
O
|
A:PRO274
|
2.3
|
70.2
|
1.0
|
|
CB
|
A:PHE250
|
2.7
|
76.3
|
1.0
|
|
N
|
A:PHE250
|
2.8
|
76.0
|
1.0
|
|
CE2
|
A:PHE279
|
2.9
|
74.8
|
1.0
|
|
CA
|
A:PHE250
|
3.3
|
73.3
|
1.0
|
|
CD2
|
A:PHE279
|
3.3
|
75.5
|
1.0
|
|
C
|
A:PRO274
|
3.4
|
65.1
|
1.0
|
|
O
|
A:THR275
|
3.6
|
74.7
|
1.0
|
|
C
|
A:THR275
|
3.6
|
77.9
|
1.0
|
|
O
|
A:LEU247
|
3.7
|
80.1
|
1.0
|
|
CA
|
A:LEU247
|
3.7
|
78.6
|
1.0
|
|
C
|
A:LEU247
|
3.9
|
82.3
|
1.0
|
|
CB
|
A:SER249
|
3.9
|
72.5
|
1.0
|
|
C
|
A:SER249
|
3.9
|
75.3
|
1.0
|
|
O
|
A:ASP246
|
3.9
|
83.2
|
1.0
|
|
CA
|
A:THR275
|
3.9
|
75.8
|
1.0
|
|
CG
|
A:PHE250
|
4.0
|
75.8
|
1.0
|
|
N
|
A:ASN276
|
4.1
|
77.4
|
1.0
|
|
N
|
A:THR275
|
4.1
|
69.9
|
1.0
|
|
CZ
|
A:PHE279
|
4.1
|
70.3
|
1.0
|
|
OD1
|
A:ASN276
|
4.1
|
70.1
|
1.0
|
|
N
|
A:SER249
|
4.2
|
73.9
|
1.0
|
|
CA
|
A:SER249
|
4.2
|
73.6
|
1.0
|
|
CD2
|
A:LEU247
|
4.3
|
65.7
|
1.0
|
|
CG
|
A:PRO274
|
4.5
|
62.5
|
1.0
|
|
CA
|
A:PRO274
|
4.5
|
61.9
|
1.0
|
|
CB
|
A:LEU247
|
4.6
|
81.6
|
1.0
|
|
C
|
A:PHE250
|
4.6
|
73.8
|
1.0
|
|
CA
|
A:ASN276
|
4.6
|
76.3
|
1.0
|
|
CD1
|
A:PHE250
|
4.7
|
77.3
|
1.0
|
|
CB
|
A:PRO274
|
4.7
|
63.6
|
1.0
|
|
CG
|
A:PHE279
|
4.7
|
70.7
|
1.0
|
|
N
|
A:LEU247
|
4.7
|
78.2
|
1.0
|
|
C
|
A:ASP246
|
4.7
|
80.3
|
1.0
|
|
N
|
A:SER248
|
4.7
|
90.9
|
1.0
|
|
OG
|
A:SER249
|
4.8
|
78.4
|
1.0
|
|
N
|
A:ARG251
|
4.9
|
73.8
|
1.0
|
|
N
|
A:PRO274
|
4.9
|
67.4
|
1.0
|
|
O
|
A:SER249
|
5.0
|
77.7
|
1.0
|
|
Magnesium binding site 5 out
of 9 in 5yjh
Go back to
Magnesium Binding Sites List in 5yjh
Magnesium binding site 5 out
of 9 in the Structural Insights Into Periostin Functions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structural Insights Into Periostin Functions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg724
b:70.2
occ:1.00
|
O
|
A:PRO408
|
2.6
|
55.0
|
1.0
|
|
OD1
|
A:ASN410
|
2.7
|
49.2
|
1.0
|
|
O
|
A:GLN380
|
2.8
|
57.8
|
1.0
|
|
CA
|
A:GLN381
|
3.0
|
52.6
|
1.0
|
|
C
|
A:GLN381
|
3.1
|
54.9
|
1.0
|
|
O
|
A:GLN381
|
3.2
|
53.3
|
1.0
|
|
N
|
A:PHE384
|
3.2
|
47.3
|
1.0
|
|
N
|
A:ASN410
|
3.3
|
47.6
|
1.0
|
|
C
|
A:VAL409
|
3.5
|
51.4
|
1.0
|
|
CB
|
A:PHE384
|
3.6
|
46.5
|
1.0
|
|
C
|
A:GLN380
|
3.6
|
56.5
|
1.0
|
|
CG
|
A:ASN410
|
3.7
|
49.7
|
1.0
|
|
CA
|
A:ASN410
|
3.8
|
46.3
|
1.0
|
|
N
|
A:GLN381
|
3.8
|
55.2
|
1.0
|
|
C
|
A:PRO408
|
3.8
|
47.0
|
1.0
|
|
N
|
A:THR383
|
3.8
|
47.6
|
1.0
|
|
N
|
A:THR382
|
3.9
|
55.5
|
1.0
|
|
CB
|
A:THR383
|
3.9
|
47.9
|
1.0
|
|
CA
|
A:VAL409
|
3.9
|
49.3
|
1.0
|
|
CE2
|
A:PHE413
|
3.9
|
54.7
|
1.0
|
|
O
|
A:VAL409
|
4.0
|
50.5
|
1.0
|
|
CA
|
A:PHE384
|
4.0
|
41.5
|
1.0
|
|
CA
|
A:THR383
|
4.2
|
46.5
|
1.0
|
|
C
|
A:THR383
|
4.2
|
49.3
|
1.0
|
|
CB
|
A:GLN381
|
4.2
|
53.2
|
1.0
|
|
CB
|
A:ASN410
|
4.3
|
45.3
|
1.0
|
|
N
|
A:VAL409
|
4.3
|
48.6
|
1.0
|
|
CD2
|
A:PHE413
|
4.4
|
54.7
|
1.0
|
|
C
|
A:THR382
|
4.5
|
53.2
|
1.0
|
|
OG1
|
A:THR383
|
4.6
|
49.8
|
1.0
|
|
ND2
|
A:ASN410
|
4.7
|
49.3
|
1.0
|
|
CG
|
A:GLN381
|
4.8
|
53.7
|
1.0
|
|
CA
|
A:THR382
|
4.8
|
54.5
|
1.0
|
|
CG
|
A:PHE384
|
4.9
|
45.9
|
1.0
|
|
CG2
|
A:THR383
|
4.9
|
40.9
|
1.0
|
|
Magnesium binding site 6 out
of 9 in 5yjh
Go back to
Magnesium Binding Sites List in 5yjh
Magnesium binding site 6 out
of 9 in the Structural Insights Into Periostin Functions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structural Insights Into Periostin Functions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg725
b:0.8
occ:1.00
|
N
|
A:PHE512
|
2.3
|
94.2
|
1.0
|
|
OD1
|
A:ASN538
|
2.7
|
91.1
|
1.0
|
|
CB
|
A:PHE512
|
2.8
|
84.4
|
1.0
|
|
CE2
|
A:PHE541
|
3.0
|
0.3
|
1.0
|
|
CA
|
A:PHE512
|
3.0
|
81.0
|
1.0
|
|
O
|
A:PHE509
|
3.2
|
84.3
|
1.0
|
|
O
|
A:PRO536
|
3.3
|
85.6
|
1.0
|
|
CD2
|
A:PHE541
|
3.4
|
0.4
|
1.0
|
|
C
|
A:THR511
|
3.4
|
89.7
|
1.0
|
|
CB
|
A:THR511
|
3.5
|
93.4
|
1.0
|
|
C
|
A:PHE509
|
3.5
|
86.1
|
1.0
|
|
N
|
A:THR511
|
3.6
|
87.7
|
1.0
|
|
CA
|
A:THR511
|
3.6
|
89.4
|
1.0
|
|
CG
|
A:ASN538
|
3.8
|
93.7
|
1.0
|
|
N
|
A:ASN538
|
3.9
|
97.3
|
1.0
|
|
CA
|
A:PHE509
|
3.9
|
85.8
|
1.0
|
|
CZ
|
A:PHE541
|
3.9
|
95.8
|
1.0
|
|
O
|
A:ARG508
|
3.9
|
92.0
|
1.0
|
|
C
|
A:THR537
|
4.1
|
98.7
|
1.0
|
|
CG
|
A:PHE512
|
4.1
|
91.5
|
1.0
|
|
CA
|
A:ASN538
|
4.2
|
96.8
|
1.0
|
|
N
|
A:SER510
|
4.2
|
96.6
|
1.0
|
|
C
|
A:SER510
|
4.2
|
91.3
|
1.0
|
|
O
|
A:THR537
|
4.3
|
98.3
|
1.0
|
|
CG2
|
A:THR511
|
4.3
|
88.0
|
1.0
|
|
C
|
A:PHE512
|
4.3
|
81.2
|
1.0
|
|
C
|
A:PRO536
|
4.5
|
89.9
|
1.0
|
|
O
|
A:THR511
|
4.5
|
84.4
|
1.0
|
|
OG1
|
A:THR511
|
4.5
|
0.8
|
1.0
|
|
CG
|
A:PHE541
|
4.5
|
0.7
|
1.0
|
|
N
|
A:LEU513
|
4.6
|
80.3
|
1.0
|
|
CB
|
A:ASN538
|
4.6
|
97.7
|
1.0
|
|
CA
|
A:THR537
|
4.7
|
87.2
|
1.0
|
|
C
|
A:ARG508
|
4.8
|
88.3
|
1.0
|
|
ND2
|
A:ASN538
|
4.8
|
88.6
|
1.0
|
|
N
|
A:PHE509
|
4.8
|
84.7
|
1.0
|
|
O
|
A:SER510
|
4.8
|
87.7
|
1.0
|
|
CD1
|
A:PHE512
|
4.8
|
91.8
|
1.0
|
|
CA
|
A:SER510
|
4.9
|
96.4
|
1.0
|
|
CE1
|
A:PHE541
|
5.0
|
94.8
|
1.0
|
|
CB
|
A:PHE509
|
5.0
|
89.3
|
1.0
|
|
Magnesium binding site 7 out
of 9 in 5yjh
Go back to
Magnesium Binding Sites List in 5yjh
Magnesium binding site 7 out
of 9 in the Structural Insights Into Periostin Functions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structural Insights Into Periostin Functions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg726
b:57.9
occ:1.00
|
O
|
A:CYS208
|
2.4
|
41.5
|
1.0
|
|
OD2
|
A:ASP350
|
2.7
|
52.7
|
1.0
|
|
CG
|
A:GLU313
|
3.1
|
48.2
|
1.0
|
|
N
|
A:GLU313
|
3.2
|
50.5
|
1.0
|
|
CB
|
A:GLU313
|
3.2
|
43.5
|
1.0
|
|
NH2
|
A:ARG228
|
3.2
|
58.7
|
1.0
|
|
CG
|
A:ASP350
|
3.3
|
52.8
|
1.0
|
|
CB
|
A:CYS311
|
3.5
|
46.7
|
1.0
|
|
C
|
A:CYS208
|
3.5
|
47.6
|
1.0
|
|
OD1
|
A:ASP350
|
3.5
|
52.7
|
1.0
|
|
OG
|
A:SER312
|
3.5
|
47.2
|
1.0
|
|
CZ
|
A:ARG228
|
3.7
|
56.0
|
1.0
|
|
CB
|
A:CYS208
|
3.7
|
44.3
|
1.0
|
|
N
|
A:SER312
|
3.7
|
47.2
|
1.0
|
|
NH1
|
A:ARG228
|
3.8
|
53.6
|
1.0
|
|
CA
|
A:GLU313
|
3.8
|
46.8
|
1.0
|
|
CA
|
A:CYS208
|
4.0
|
46.9
|
1.0
|
|
C
|
A:SER312
|
4.2
|
46.3
|
1.0
|
|
C
|
A:CYS311
|
4.2
|
51.5
|
1.0
|
|
CA
|
A:SER312
|
4.3
|
40.1
|
1.0
|
|
CA
|
A:CYS311
|
4.3
|
47.9
|
1.0
|
|
CB
|
A:SER312
|
4.4
|
46.1
|
1.0
|
|
CB
|
A:ASP350
|
4.5
|
51.2
|
1.0
|
|
CD
|
A:GLU313
|
4.5
|
54.4
|
1.0
|
|
SG
|
A:CYS311
|
4.5
|
53.4
|
1.0
|
|
N
|
A:ALA209
|
4.6
|
50.0
|
1.0
|
|
SG
|
A:CYS208
|
4.6
|
50.4
|
1.0
|
|
NE
|
A:ARG228
|
4.7
|
46.2
|
1.0
|
|
CG2
|
A:THR205
|
4.8
|
41.2
|
1.0
|
|
C
|
A:GLU313
|
4.8
|
44.0
|
1.0
|
|
N
|
A:ARG210
|
4.9
|
47.7
|
1.0
|
|
OE2
|
A:GLU313
|
4.9
|
57.8
|
1.0
|
|
CA
|
A:ALA209
|
5.0
|
48.1
|
1.0
|
|
Magnesium binding site 8 out
of 9 in 5yjh
Go back to
Magnesium Binding Sites List in 5yjh
Magnesium binding site 8 out
of 9 in the Structural Insights Into Periostin Functions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structural Insights Into Periostin Functions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg727
b:84.4
occ:1.00
|
OD2
|
A:ASP613
|
2.8
|
62.8
|
1.0
|
|
OG
|
A:SER612
|
2.8
|
72.9
|
1.0
|
|
OE1
|
A:GLU597
|
2.9
|
66.4
|
1.0
|
|
CB
|
A:SER612
|
3.2
|
69.3
|
1.0
|
|
OE2
|
A:GLU597
|
3.2
|
75.3
|
1.0
|
|
CG
|
A:ASP613
|
3.3
|
58.7
|
1.0
|
|
CB
|
A:LEU602
|
3.4
|
65.9
|
1.0
|
|
CD
|
A:GLU597
|
3.5
|
71.6
|
1.0
|
|
OD1
|
A:ASP613
|
3.5
|
62.4
|
1.0
|
|
CA
|
A:GLY574
|
3.6
|
57.3
|
1.0
|
|
N
|
A:LEU602
|
3.9
|
75.4
|
1.0
|
|
N
|
A:GLY574
|
4.0
|
57.3
|
1.0
|
|
CA
|
A:LEU602
|
4.2
|
67.9
|
1.0
|
|
C
|
A:GLY574
|
4.4
|
58.8
|
1.0
|
|
CD2
|
A:LEU602
|
4.4
|
60.1
|
1.0
|
|
CA
|
A:SER612
|
4.4
|
72.8
|
1.0
|
|
CG
|
A:LEU602
|
4.4
|
60.2
|
1.0
|
|
C
|
A:SER612
|
4.4
|
69.7
|
1.0
|
|
N
|
A:ASP613
|
4.5
|
64.7
|
1.0
|
|
CB
|
A:ASP613
|
4.5
|
60.7
|
1.0
|
|
O
|
A:ASP600
|
4.6
|
78.3
|
1.0
|
|
C
|
A:THR601
|
4.7
|
73.6
|
1.0
|
|
N
|
A:LYS575
|
4.7
|
58.3
|
1.0
|
|
O
|
A:SER612
|
4.9
|
65.8
|
1.0
|
|
CD1
|
A:LEU602
|
4.9
|
69.4
|
1.0
|
|
CG
|
A:GLU597
|
5.0
|
67.5
|
1.0
|
|
Magnesium binding site 9 out
of 9 in 5yjh
Go back to
Magnesium Binding Sites List in 5yjh
Magnesium binding site 9 out
of 9 in the Structural Insights Into Periostin Functions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structural Insights Into Periostin Functions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg728
b:58.0
occ:1.00
|
OG1
|
A:THR205
|
2.6
|
43.9
|
1.0
|
|
OD1
|
A:ASN197
|
2.6
|
56.1
|
1.0
|
|
N
|
A:CYS208
|
2.8
|
53.0
|
1.0
|
|
O
|
A:PHE195
|
3.2
|
53.1
|
1.0
|
|
O
|
A:THR205
|
3.4
|
46.0
|
1.0
|
|
CA
|
A:CYS208
|
3.4
|
46.9
|
1.0
|
|
CG
|
A:ASN197
|
3.4
|
46.5
|
1.0
|
|
CB
|
A:THR205
|
3.5
|
40.6
|
1.0
|
|
N
|
A:ASN207
|
3.5
|
47.1
|
1.0
|
|
CB
|
A:ASN197
|
3.5
|
42.5
|
1.0
|
|
C
|
A:THR205
|
3.5
|
47.7
|
1.0
|
|
SG
|
A:CYS311
|
3.6
|
53.4
|
1.0
|
|
N
|
A:ASN197
|
3.8
|
47.1
|
1.0
|
|
C
|
A:ASN207
|
3.8
|
49.2
|
1.0
|
|
N
|
A:VAL206
|
3.9
|
50.0
|
1.0
|
|
CA
|
A:ASN207
|
3.9
|
48.9
|
1.0
|
|
C
|
A:VAL206
|
4.0
|
50.8
|
1.0
|
|
CA
|
A:THR205
|
4.1
|
44.9
|
1.0
|
|
CA
|
A:VAL206
|
4.2
|
48.3
|
1.0
|
|
SG
|
A:CYS208
|
4.2
|
50.4
|
1.0
|
|
C
|
A:PHE195
|
4.2
|
52.0
|
1.0
|
|
C
|
A:ILE196
|
4.2
|
53.8
|
1.0
|
|
CA
|
A:ASN197
|
4.3
|
48.7
|
1.0
|
|
CB
|
A:CYS208
|
4.4
|
44.3
|
1.0
|
|
C
|
A:CYS208
|
4.5
|
47.6
|
1.0
|
|
CA
|
A:ILE196
|
4.6
|
50.5
|
1.0
|
|
ND2
|
A:ASN197
|
4.7
|
45.8
|
1.0
|
|
CG2
|
A:THR205
|
4.8
|
41.2
|
1.0
|
|
N
|
A:ILE196
|
4.8
|
51.0
|
1.0
|
|
O
|
A:VAL206
|
4.8
|
51.6
|
1.0
|
|
O
|
A:ILE196
|
4.9
|
60.1
|
1.0
|
|
N
|
A:ALA209
|
4.9
|
50.0
|
1.0
|
|
N
|
A:THR205
|
4.9
|
44.8
|
1.0
|
|
O
|
A:ASN207
|
5.0
|
43.3
|
1.0
|
|
Reference:
J.Liu,
J.Zhang,
F.Xu,
Z.Lin,
Z.Li,
H.Liu.
Structural Characterizations of Human Periostin Dimerization and Cysteinylation. Febs Lett. V. 592 1789 2018.
ISSN: ISSN 1873-3468
PubMed: 29754429
DOI: 10.1002/1873-3468.13091
Page generated: Mon Sep 30 11:13:57 2024
|
