Magnesium in PDB 5yro: RANL182A in Complex with RANBP1-CRM1

Protein crystallography data

The structure of RANL182A in Complex with RANBP1-CRM1, PDB code: 5yro was solved by Q.Sun, Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.53 / 2.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 105.259, 105.259, 307.425, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 24.5

Other elements in 5yro:

The structure of RANL182A in Complex with RANBP1-CRM1 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the RANL182A in Complex with RANBP1-CRM1 (pdb code 5yro). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the RANL182A in Complex with RANBP1-CRM1, PDB code: 5yro:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5yro

Go back to Magnesium Binding Sites List in 5yro
Magnesium binding site 1 out of 2 in the RANL182A in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of RANL182A in Complex with RANBP1-CRM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:68.7
occ:1.00
O2G A:GTP301 2.1 62.1 1.0
O A:HOH402 2.1 30.0 1.0
O A:HOH411 2.1 30.0 1.0
CG2 A:THR42 2.2 51.1 1.0
OG1 A:THR24 2.2 50.6 1.0
O1B A:GTP301 2.3 60.2 1.0
CB A:THR24 3.3 50.6 1.0
PG A:GTP301 3.3 63.5 1.0
CB A:THR42 3.3 56.8 1.0
OG1 A:THR42 3.4 65.8 1.0
PB A:GTP301 3.5 59.1 1.0
O3B A:GTP301 3.6 62.1 1.0
OD2 A:ASP65 3.8 65.3 1.0
O3G A:GTP301 3.8 64.1 1.0
N A:THR24 3.9 46.4 1.0
N A:THR42 3.9 44.0 1.0
OD1 A:ASP65 4.0 63.4 1.0
CA A:THR24 4.1 50.1 1.0
O A:THR66 4.2 47.6 1.0
O1A A:GTP301 4.2 61.0 1.0
CG A:ASP65 4.2 64.8 1.0
CA A:THR42 4.3 51.1 1.0
CG2 A:THR24 4.3 40.4 1.0
O2B A:GTP301 4.4 60.4 1.0
O1G A:GTP301 4.5 63.8 1.0
O3A A:GTP301 4.5 60.0 1.0
CE A:LYS23 4.8 48.9 1.0
CB A:LYS23 4.8 45.9 1.0
PA A:GTP301 4.8 59.6 1.0
C A:LYS23 5.0 46.8 1.0

Magnesium binding site 2 out of 2 in 5yro

Go back to Magnesium Binding Sites List in 5yro
Magnesium binding site 2 out of 2 in the RANL182A in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of RANL182A in Complex with RANBP1-CRM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:0.5
occ:1.00
O A:PRO184 4.2 78.1 1.0
CA A:PRO185 4.4 93.6 1.0
C A:PRO184 4.7 84.0 1.0
N A:PRO185 5.0 88.2 1.0

Reference:

Q.Sun, Y.Zhang. RANL182A in Complex with RANBP1-CRM1 To Be Published.
Page generated: Mon Dec 14 22:14:10 2020

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