Magnesium in PDB 5yu8: Cofilin Decorated Actin Filament

The binding sites of Magnesium atom in the Cofilin Decorated Actin Filament (pdb code 5yu8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cofilin Decorated Actin Filament, PDB code: 5yu8:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cofilin Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cofilin Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:1.0 occ:1.00 O1B A:ADP402 2.4 1.0 1.0 PB A:ADP402 3.5 1.0 1.0 O1A A:ADP402 3.6 1.0 1.0 O3B A:ADP402 3.9 1.0 1.0 OD2 A:ASP154 4.0 1.0 1.0 O3A A:ADP402 4.0 1.0 1.0 OE1 A:GLN137 4.3 1.0 1.0 PA A:ADP402 4.3 1.0 1.0 NZ A:LYS18 4.3 1.0 1.0 OD2 A:ASP11 4.6 1.0 1.0 OD1 A:ASP154 4.7 1.0 1.0 CA A:GLY156 4.7 1.0 1.0 CG A:ASP154 4.7 1.0 1.0 O2B A:ADP402 4.8 1.0 1.0 O2A A:ADP402 4.8 1.0 1.0 CD A:GLN137 4.9 1.0 1.0

Magnesium binding site 2 out of 5 in the Cofilin Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cofilin Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:1.0 occ:1.00 O1B B:ADP402 2.4 1.0 1.0 PB B:ADP402 3.5 1.0 1.0 O1A B:ADP402 3.6 1.0 1.0 O3B B:ADP402 3.9 1.0 1.0 OD2 B:ASP154 4.0 1.0 1.0 O3A B:ADP402 4.0 1.0 1.0 OE1 B:GLN137 4.3 1.0 1.0 PA B:ADP402 4.3 1.0 1.0 NZ B:LYS18 4.3 1.0 1.0 OD2 B:ASP11 4.6 1.0 1.0 OD1 B:ASP154 4.7 1.0 1.0 CA B:GLY156 4.7 1.0 1.0 CG B:ASP154 4.7 1.0 1.0 O2B B:ADP402 4.8 1.0 1.0 O2A B:ADP402 4.8 1.0 1.0 CD B:GLN137 4.9 1.0 1.0

Magnesium binding site 3 out of 5 in the Cofilin Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cofilin Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:1.0 occ:1.00 O1B C:ADP402 2.4 1.0 1.0 PB C:ADP402 3.5 1.0 1.0 O1A C:ADP402 3.6 1.0 1.0 O3B C:ADP402 3.9 1.0 1.0 OD2 C:ASP154 4.0 1.0 1.0 O3A C:ADP402 4.0 1.0 1.0 OE1 C:GLN137 4.3 1.0 1.0 PA C:ADP402 4.3 1.0 1.0 NZ C:LYS18 4.3 1.0 1.0 OD2 C:ASP11 4.6 1.0 1.0 OD1 C:ASP154 4.7 1.0 1.0 CA C:GLY156 4.7 1.0 1.0 CG C:ASP154 4.7 1.0 1.0 O2B C:ADP402 4.8 1.0 1.0 O2A C:ADP402 4.8 1.0 1.0 CD C:GLN137 4.9 1.0 1.0

Magnesium binding site 4 out of 5 in the Cofilin Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cofilin Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:1.0 occ:1.00 O1B D:ADP402 2.4 1.0 1.0 PB D:ADP402 3.5 1.0 1.0 O1A D:ADP402 3.6 1.0 1.0 O3B D:ADP402 3.9 1.0 1.0 OD2 D:ASP154 4.0 1.0 1.0 O3A D:ADP402 4.0 1.0 1.0 OE1 D:GLN137 4.3 1.0 1.0 PA D:ADP402 4.3 1.0 1.0 NZ D:LYS18 4.3 1.0 1.0 OD2 D:ASP11 4.6 1.0 1.0 OD1 D:ASP154 4.7 1.0 1.0 CA D:GLY156 4.7 1.0 1.0 CG D:ASP154 4.7 1.0 1.0 O2B D:ADP402 4.8 1.0 1.0 O2A D:ADP402 4.8 1.0 1.0 CD D:GLN137 4.9 1.0 1.0

Magnesium binding site 5 out of 5 in the Cofilin Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cofilin Decorated Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg401 b:1.0 occ:1.00 O1B E:ADP402 2.4 1.0 1.0 PB E:ADP402 3.5 1.0 1.0 O1A E:ADP402 3.6 1.0 1.0 O3B E:ADP402 3.9 1.0 1.0 OD2 E:ASP154 4.0 1.0 1.0 O3A E:ADP402 4.0 1.0 1.0 OE1 E:GLN137 4.3 1.0 1.0 PA E:ADP402 4.3 1.0 1.0 NZ E:LYS18 4.3 1.0 1.0 OD2 E:ASP11 4.6 1.0 1.0 OD1 E:ASP154 4.7 1.0 1.0 CA E:GLY156 4.7 1.0 1.0 CG E:ASP154 4.7 1.0 1.0 O2B E:ADP402 4.8 1.0 1.0 O2A E:ADP402 4.8 1.0 1.0 CD E:GLN137 4.9 1.0 1.0

K.Tanaka, S.Takeda, K.Mitsuoka, T.Oda, C.Kimura-Sakiyama, Y.Maeda, A.Narita. Structural Basis For Cofilin Binding and Actin Filament Disassembly Nat Commun V. 9 1860 2018.
ISSN: ESSN 2041-1723
PubMed: 29749375
DOI: 10.1038/S41467-018-04290-W