Magnesium in PDB 5yw2: Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis.

All present enzymatic activity of Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis.:
2.4.2.7;

The structure of Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis., PDB code: 5yw2 was solved by G.C.Pavithra, U.A.Ramagopal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.36 / 2.28
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.168, 82.147, 170.119, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 25.9

The structure of Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis. also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Magnesium atom in the Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis. (pdb code 5yw2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis., PDB code: 5yw2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:68.1 occ:1.00 O A:HOH322 2.0 63.0 1.0 O A:HOH301 2.0 42.2 1.0 O A:HOH308 2.1 52.2 1.0 O A:HOH320 2.1 50.1 1.0 O A:HOH321 2.3 54.2 1.0 O A:ARG90 3.7 35.7 1.0 O A:LEU88 4.1 36.1 1.0 O A:PRO89 4.1 43.4 1.0 O A:HOH316 4.3 36.5 1.0 OG1 A:THR92 4.3 41.7 1.0 C A:ARG90 4.5 37.6 1.0 C A:PRO89 4.6 40.2 1.0 CE1 B:PHE16 4.7 44.2 1.0 CG2 A:THR92 4.9 37.3 1.0 N A:ARG90 4.9 39.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Adenine Phosphoribosyltransferase From Francisella Tularensis. within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg203 b:60.1 occ:1.00 O D:HOH313 1.9 65.6 1.0 O D:HOH302 2.0 37.5 1.0 O D:HOH310 2.1 42.2 1.0 O D:HOH303 2.1 42.7 1.0 O D:HOH311 2.3 48.6 1.0 O D:HOH305 3.6 34.3 1.0 O D:ARG90 3.8 41.8 1.0 O D:LEU88 3.9 42.3 1.0 OG1 D:THR92 4.2 38.8 1.0 O D:PRO89 4.4 40.3 1.0 C D:PRO89 4.7 41.2 1.0 C D:ARG90 4.8 43.5 1.0 CG2 D:THR92 5.0 39.8 1.0 CE2 C:PHE16 5.0 54.7 1.0

G.C.Pavithra, U.A.Ramagopal. Crystal Structures of Aprt From Francisella Tularensis - An N-H···N Hydrogen Bond Imparts Adenine Specificity in Adenine Phosporibosyltransferases. Febs J. V. 285 2306 2018.
ISSN: ISSN 1742-4658
PubMed: 29694705
DOI: 10.1111/FEBS.14481