Magnesium in PDB 5ywb: Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A)

The binding sites of Magnesium atom in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A) (pdb code 5ywb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A), PDB code: 5ywb:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2503 b:0.8 occ:1.00 OE1 B:GLN775 2.0 0.8 1.0 O3B B:ADP2501 2.1 0.1 1.0 NE2 B:GLN775 2.1 0.8 1.0 CD B:GLN775 2.3 0.8 1.0 OG B:SER720 2.4 0.6 1.0 O2B B:ADP2501 2.4 0.4 1.0 PB B:ADP2501 2.7 0.7 1.0 O1A B:ADP2501 3.4 0.9 1.0 CB B:SER720 3.6 0.6 1.0 O3A B:ADP2501 3.7 1.0 1.0 CG B:GLN775 3.8 0.8 1.0 OG B:SER1483 3.9 0.2 1.0 O1B B:ADP2501 3.9 0.4 1.0 PA B:ADP2501 4.0 0.8 1.0 OD1 B:ASP854 4.1 0.7 1.0 N B:SER720 4.3 0.6 1.0 O2A B:ADP2501 4.4 0.1 1.0 CB B:GLN775 4.5 0.8 1.0 CA B:SER720 4.6 0.6 1.0 CG B:ASP854 4.9 0.7 1.0 OD2 B:ASP854 5.0 0.7 1.0 CB B:SER1483 5.0 0.2 1.0

Magnesium binding site 2 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2504 b:0.2 occ:1.00 O2B B:ADP2502 2.8 0.6 1.0 OG B:SER1386 3.1 0.3 1.0 CB B:SER1386 3.3 0.3 1.0 OE1 B:GLN1427 3.5 0.8 1.0 O3B B:ADP2502 3.7 0.3 1.0 PB B:ADP2502 3.8 0.7 1.0 NZ B:LYS1385 4.0 0.5 1.0 CE B:LYS1385 4.1 0.5 1.0 OD2 B:ASP1506 4.3 0.6 1.0 OD1 B:ASP1506 4.4 0.6 1.0 CA B:SER1386 4.5 0.3 1.0 N B:SER1386 4.6 0.3 1.0 O1B B:ADP2502 4.6 0.2 1.0 CD B:GLN1427 4.7 0.8 1.0 CG B:ASP1506 4.8 0.6 1.0 CG B:LYS1385 4.8 0.5 1.0 O2A B:ADP2502 5.0 0.3 1.0 CD B:LYS1385 5.0 0.5 1.0

Magnesium binding site 3 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2503 b:0.8 occ:1.00 OE1 D:GLN775 2.0 0.8 1.0 O3B D:ADP2501 2.1 0.1 1.0 NE2 D:GLN775 2.1 0.8 1.0 CD D:GLN775 2.3 0.8 1.0 OG D:SER720 2.4 0.6 1.0 O2B D:ADP2501 2.4 0.4 1.0 PB D:ADP2501 2.7 0.7 1.0 O1A D:ADP2501 3.4 0.9 1.0 CB D:SER720 3.6 0.6 1.0 O3A D:ADP2501 3.7 1.0 1.0 CG D:GLN775 3.8 0.8 1.0 OG D:SER1483 3.9 0.2 1.0 O1B D:ADP2501 3.9 0.4 1.0 PA D:ADP2501 4.0 0.8 1.0 OD1 D:ASP854 4.1 0.7 1.0 N D:SER720 4.3 0.6 1.0 O2A D:ADP2501 4.4 0.1 1.0 CB D:GLN775 4.5 0.8 1.0 CA D:SER720 4.6 0.6 1.0 CG D:ASP854 4.9 0.7 1.0 OD2 D:ASP854 5.0 0.7 1.0 CB D:SER1483 5.0 0.2 1.0

Magnesium binding site 4 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2504 b:0.2 occ:1.00 O2B D:ADP2502 2.8 0.6 1.0 OG D:SER1386 3.1 0.3 1.0 CB D:SER1386 3.3 0.3 1.0 OE1 D:GLN1427 3.5 0.8 1.0 O3B D:ADP2502 3.7 0.3 1.0 PB D:ADP2502 3.8 0.7 1.0 NZ D:LYS1385 4.0 0.5 1.0 CE D:LYS1385 4.1 0.5 1.0 OD2 D:ASP1506 4.3 0.6 1.0 OD1 D:ASP1506 4.4 0.6 1.0 CA D:SER1386 4.5 0.3 1.0 N D:SER1386 4.6 0.3 1.0 O1B D:ADP2502 4.6 0.2 1.0 CD D:GLN1427 4.7 0.8 1.0 CG D:ASP1506 4.8 0.6 1.0 CG D:LYS1385 4.8 0.5 1.0 O2A D:ADP2502 5.0 0.3 1.0 CD D:LYS1385 5.0 0.5 1.0

Magnesium binding site 5 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg2503 b:0.8 occ:1.00 OE1 F:GLN775 2.0 0.8 1.0 O3B F:ADP2501 2.1 0.1 1.0 NE2 F:GLN775 2.1 0.8 1.0 CD F:GLN775 2.3 0.8 1.0 OG F:SER720 2.4 0.6 1.0 O2B F:ADP2501 2.4 0.4 1.0 PB F:ADP2501 2.7 0.7 1.0 O1A F:ADP2501 3.4 0.9 1.0 CB F:SER720 3.6 0.6 1.0 O3A F:ADP2501 3.7 1.0 1.0 CG F:GLN775 3.8 0.8 1.0 OG F:SER1483 3.9 0.2 1.0 O1B F:ADP2501 3.9 0.4 1.0 PA F:ADP2501 4.0 0.8 1.0 OD1 F:ASP854 4.1 0.7 1.0 N F:SER720 4.3 0.6 1.0 O2A F:ADP2501 4.4 0.1 1.0 CB F:GLN775 4.5 0.8 1.0 CA F:SER720 4.6 0.6 1.0 CG F:ASP854 4.9 0.7 1.0 OD2 F:ASP854 5.0 0.7 1.0 CB F:SER1483 5.0 0.2 1.0

Magnesium binding site 6 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg2504 b:0.2 occ:1.00 O2B F:ADP2502 2.8 0.6 1.0 OG F:SER1386 3.1 0.3 1.0 CB F:SER1386 3.3 0.3 1.0 OE1 F:GLN1427 3.5 0.8 1.0 O3B F:ADP2502 3.7 0.3 1.0 PB F:ADP2502 3.8 0.7 1.0 NZ F:LYS1385 4.0 0.5 1.0 CE F:LYS1385 4.1 0.5 1.0 OD2 F:ASP1506 4.3 0.6 1.0 OD1 F:ASP1506 4.4 0.6 1.0 CA F:SER1386 4.5 0.3 1.0 N F:SER1386 4.6 0.3 1.0 O1B F:ADP2502 4.6 0.2 1.0 CD F:GLN1427 4.7 0.8 1.0 CG F:ASP1506 4.8 0.6 1.0 CG F:LYS1385 4.8 0.5 1.0 O2A F:ADP2502 5.0 0.3 1.0 CD F:LYS1385 5.0 0.5 1.0

Magnesium binding site 7 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A) within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg2503 b:0.8 occ:1.00 OE1 H:GLN775 2.0 0.8 1.0 O3B H:ADP2501 2.1 0.1 1.0 NE2 H:GLN775 2.1 0.8 1.0 CD H:GLN775 2.3 0.8 1.0 OG H:SER720 2.4 0.6 1.0 O2B H:ADP2501 2.4 0.4 1.0 PB H:ADP2501 2.7 0.7 1.0 O1A H:ADP2501 3.4 0.9 1.0 CB H:SER720 3.6 0.6 1.0 O3A H:ADP2501 3.7 1.0 1.0 CG H:GLN775 3.8 0.8 1.0 OG H:SER1483 3.9 0.2 1.0 O1B H:ADP2501 3.9 0.4 1.0 PA H:ADP2501 4.0 0.8 1.0 OD1 H:ASP854 4.1 0.7 1.0 N H:SER720 4.3 0.6 1.0 O2A H:ADP2501 4.4 0.1 1.0 CB H:GLN775 4.5 0.8 1.0 CA H:SER720 4.6 0.6 1.0 CG H:ASP854 4.9 0.7 1.0 OD2 H:ASP854 5.0 0.7 1.0 CB H:SER1483 5.0 0.2 1.0

Magnesium binding site 8 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS2 at 5.2A) within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg2504 b:0.2 occ:1.00 O2B H:ADP2502 2.8 0.6 1.0 OG H:SER1386 3.1 0.3 1.0 CB H:SER1386 3.3 0.3 1.0 OE1 H:GLN1427 3.5 0.8 1.0 O3B H:ADP2502 3.7 0.3 1.0 PB H:ADP2502 3.8 0.7 1.0 NZ H:LYS1385 4.0 0.5 1.0 CE H:LYS1385 4.1 0.5 1.0 OD2 H:ASP1506 4.3 0.6 1.0 OD1 H:ASP1506 4.4 0.6 1.0 CA H:SER1386 4.5 0.3 1.0 N H:SER1386 4.6 0.3 1.0 O1B H:ADP2502 4.6 0.2 1.0 CD H:GLN1427 4.7 0.8 1.0 CG H:ASP1506 4.8 0.6 1.0 CG H:LYS1385 4.8 0.5 1.0 O2A H:ADP2502 5.0 0.3 1.0 CD H:LYS1385 5.0 0.5 1.0

J.X.Wu, D.Ding, M.Wang, Y.Kang, X.Zeng, L.Chen. Ligand Binding and Conformational Changes of SUR1 Subunit in Pancreatic Atp-Sensitive Potassium Channels. Protein Cell V. 9 553 2018.
ISSN: ESSN 1674-8018
PubMed: 29594720
DOI: 10.1007/S13238-018-0530-Y