Magnesium in PDB 5ywc: Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A)

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A) (pdb code 5ywc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A), PDB code: 5ywc:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 5ywc

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Magnesium binding site 1 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2503

b:0.1
occ:1.00
OE1 B:GLN775 2.0 0.4 1.0
O3B B:ADP2501 2.1 1.0 1.0
NE2 B:GLN775 2.1 0.4 1.0
CD B:GLN775 2.3 0.4 1.0
OG B:SER720 2.4 0.5 1.0
O2B B:ADP2501 2.4 0.3 1.0
PB B:ADP2501 2.7 0.6 1.0
O2A B:ADP2501 3.4 0.8 1.0
CB B:SER720 3.6 0.5 1.0
O3A B:ADP2501 3.7 0.9 1.0
CG B:GLN775 3.8 0.4 1.0
OG B:SER1483 3.9 0.0 1.0
O1B B:ADP2501 3.9 0.3 1.0
PA B:ADP2501 4.0 0.7 1.0
OD1 B:ASP854 4.1 0.8 1.0
N B:SER720 4.3 0.5 1.0
O1A B:ADP2501 4.4 1.0 1.0
CB B:GLN775 4.5 0.4 1.0
CA B:SER720 4.6 0.5 1.0
CG B:ASP854 4.9 0.8 1.0
OD2 B:ASP854 5.0 0.8 1.0
CB B:SER1483 5.0 0.0 1.0

Magnesium binding site 2 out of 8 in 5ywc

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Magnesium binding site 2 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2504

b:0.8
occ:1.00
O2B B:ADP2502 2.8 0.2 1.0
OG B:SER1386 3.1 0.5 1.0
CB B:SER1386 3.3 0.5 1.0
OE1 B:GLN1427 3.5 0.1 1.0
O3B B:ADP2502 3.7 0.9 1.0
PB B:ADP2502 3.8 0.3 1.0
NZ B:LYS1385 4.0 0.7 1.0
CE B:LYS1385 4.1 0.7 1.0
OD2 B:ASP1506 4.3 1.0 1.0
OD1 B:ASP1506 4.4 1.0 1.0
CA B:SER1386 4.5 0.5 1.0
N B:SER1386 4.6 0.5 1.0
O1B B:ADP2502 4.6 0.8 1.0
CD B:GLN1427 4.7 0.1 1.0
CG B:ASP1506 4.8 1.0 1.0
CG B:LYS1385 4.8 0.7 1.0
O2A B:ADP2502 5.0 0.9 1.0
CD B:LYS1385 5.0 0.7 1.0

Magnesium binding site 3 out of 8 in 5ywc

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Magnesium binding site 3 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2503

b:0.1
occ:1.00
OE1 D:GLN775 2.0 0.4 1.0
O3B D:ADP2501 2.1 1.0 1.0
NE2 D:GLN775 2.1 0.4 1.0
CD D:GLN775 2.3 0.4 1.0
OG D:SER720 2.4 0.5 1.0
O2B D:ADP2501 2.4 0.3 1.0
PB D:ADP2501 2.7 0.6 1.0
O2A D:ADP2501 3.4 0.8 1.0
CB D:SER720 3.6 0.5 1.0
O3A D:ADP2501 3.7 0.9 1.0
CG D:GLN775 3.8 0.4 1.0
OG D:SER1483 3.9 0.0 1.0
O1B D:ADP2501 3.9 0.3 1.0
PA D:ADP2501 4.0 0.7 1.0
OD1 D:ASP854 4.1 0.8 1.0
N D:SER720 4.3 0.5 1.0
O1A D:ADP2501 4.4 1.0 1.0
CB D:GLN775 4.5 0.4 1.0
CA D:SER720 4.6 0.5 1.0
CG D:ASP854 4.9 0.8 1.0
OD2 D:ASP854 5.0 0.8 1.0
CB D:SER1483 5.0 0.0 1.0

Magnesium binding site 4 out of 8 in 5ywc

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Magnesium binding site 4 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2504

b:0.8
occ:1.00
O2B D:ADP2502 2.8 0.2 1.0
OG D:SER1386 3.1 0.5 1.0
CB D:SER1386 3.3 0.5 1.0
OE1 D:GLN1427 3.5 0.1 1.0
O3B D:ADP2502 3.7 0.9 1.0
PB D:ADP2502 3.8 0.3 1.0
NZ D:LYS1385 4.0 0.7 1.0
CE D:LYS1385 4.1 0.7 1.0
OD2 D:ASP1506 4.3 1.0 1.0
OD1 D:ASP1506 4.4 1.0 1.0
CA D:SER1386 4.5 0.5 1.0
N D:SER1386 4.6 0.5 1.0
O1B D:ADP2502 4.6 0.8 1.0
CD D:GLN1427 4.7 0.1 1.0
CG D:ASP1506 4.8 1.0 1.0
CG D:LYS1385 4.8 0.7 1.0
O2A D:ADP2502 5.0 0.9 1.0
CD D:LYS1385 5.0 0.7 1.0

Magnesium binding site 5 out of 8 in 5ywc

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Magnesium binding site 5 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg2503

b:0.1
occ:1.00
OE1 F:GLN775 2.0 0.4 1.0
O3B F:ADP2501 2.1 1.0 1.0
NE2 F:GLN775 2.1 0.4 1.0
CD F:GLN775 2.3 0.4 1.0
OG F:SER720 2.4 0.5 1.0
O2B F:ADP2501 2.4 0.3 1.0
PB F:ADP2501 2.7 0.6 1.0
O2A F:ADP2501 3.4 0.8 1.0
CB F:SER720 3.6 0.5 1.0
O3A F:ADP2501 3.7 0.9 1.0
CG F:GLN775 3.8 0.4 1.0
OG F:SER1483 3.9 0.0 1.0
O1B F:ADP2501 3.9 0.3 1.0
PA F:ADP2501 4.0 0.7 1.0
OD1 F:ASP854 4.1 0.8 1.0
N F:SER720 4.3 0.5 1.0
O1A F:ADP2501 4.4 1.0 1.0
CB F:GLN775 4.5 0.4 1.0
CA F:SER720 4.6 0.5 1.0
CG F:ASP854 4.9 0.8 1.0
OD2 F:ASP854 5.0 0.8 1.0
CB F:SER1483 5.0 0.0 1.0

Magnesium binding site 6 out of 8 in 5ywc

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Magnesium binding site 6 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg2504

b:0.8
occ:1.00
O2B F:ADP2502 2.8 0.2 1.0
OG F:SER1386 3.1 0.5 1.0
CB F:SER1386 3.3 0.5 1.0
OE1 F:GLN1427 3.5 0.1 1.0
O3B F:ADP2502 3.7 0.9 1.0
PB F:ADP2502 3.8 0.3 1.0
NZ F:LYS1385 4.0 0.7 1.0
CE F:LYS1385 4.1 0.7 1.0
OD2 F:ASP1506 4.3 1.0 1.0
OD1 F:ASP1506 4.4 1.0 1.0
CA F:SER1386 4.5 0.5 1.0
N F:SER1386 4.6 0.5 1.0
O1B F:ADP2502 4.6 0.8 1.0
CD F:GLN1427 4.7 0.1 1.0
CG F:ASP1506 4.8 1.0 1.0
CG F:LYS1385 4.8 0.7 1.0
O2A F:ADP2502 5.0 0.9 1.0
CD F:LYS1385 5.0 0.7 1.0

Magnesium binding site 7 out of 8 in 5ywc

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Magnesium binding site 7 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg2503

b:0.1
occ:1.00
OE1 H:GLN775 2.0 0.4 1.0
O3B H:ADP2501 2.1 1.0 1.0
NE2 H:GLN775 2.1 0.4 1.0
CD H:GLN775 2.3 0.4 1.0
OG H:SER720 2.4 0.5 1.0
O2B H:ADP2501 2.4 0.3 1.0
PB H:ADP2501 2.7 0.6 1.0
O2A H:ADP2501 3.4 0.8 1.0
CB H:SER720 3.6 0.5 1.0
O3A H:ADP2501 3.7 0.9 1.0
CG H:GLN775 3.8 0.4 1.0
OG H:SER1483 3.9 0.0 1.0
O1B H:ADP2501 3.9 0.3 1.0
PA H:ADP2501 4.0 0.7 1.0
OD1 H:ASP854 4.1 0.8 1.0
N H:SER720 4.3 0.5 1.0
O1A H:ADP2501 4.4 1.0 1.0
CB H:GLN775 4.5 0.4 1.0
CA H:SER720 4.6 0.5 1.0
CG H:ASP854 4.9 0.8 1.0
OD2 H:ASP854 5.0 0.8 1.0
CB H:SER1483 5.0 0.0 1.0

Magnesium binding site 8 out of 8 in 5ywc

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Magnesium binding site 8 out of 8 in the Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Pancreatic Atp-Sensitive Potassium Channel Bound with Mg- Adp (Ctd CLASS1 at 4.3A) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg2504

b:0.8
occ:1.00
O2B H:ADP2502 2.8 0.2 1.0
OG H:SER1386 3.1 0.5 1.0
CB H:SER1386 3.3 0.5 1.0
OE1 H:GLN1427 3.5 0.1 1.0
O3B H:ADP2502 3.7 0.9 1.0
PB H:ADP2502 3.8 0.3 1.0
NZ H:LYS1385 4.0 0.7 1.0
CE H:LYS1385 4.1 0.7 1.0
OD2 H:ASP1506 4.3 1.0 1.0
OD1 H:ASP1506 4.4 1.0 1.0
CA H:SER1386 4.5 0.5 1.0
N H:SER1386 4.6 0.5 1.0
O1B H:ADP2502 4.6 0.8 1.0
CD H:GLN1427 4.7 0.1 1.0
CG H:ASP1506 4.8 1.0 1.0
CG H:LYS1385 4.8 0.7 1.0
O2A H:ADP2502 5.0 0.9 1.0
CD H:LYS1385 5.0 0.7 1.0

Reference:

J.X.Wu, D.Ding, M.Wang, Y.Kang, X.Zeng, L.Chen. Ligand Binding and Conformational Changes of SUR1 Subunit in Pancreatic Atp-Sensitive Potassium Channels. Protein Cell V. 9 553 2018.
ISSN: ESSN 1674-8018
PubMed: 29594720
DOI: 10.1007/S13238-018-0530-Y
Page generated: Mon Dec 14 22:15:23 2020

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