Magnesium in PDB 5z16: A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii

All present enzymatic activity of A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii:
1.1.1.42;

The structure of A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii, PDB code: 5z16 was solved by P.Song, S.P.Huang, P.Wang, G.P.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.54 / 3.00
Space group	P 42 2 2
Cell size a, b, c (Å), α, β, γ (°)	137.161, 137.161, 238.132, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 27.6

The binding sites of Magnesium atom in the A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii (pdb code 5z16). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii, PDB code: 5z16:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:27.8 occ:1.00 OD1 A:ASP551 2.1 54.1 1.0 OD2 A:ASP352 2.5 38.6 1.0 O A:ASP551 2.9 43.5 1.0 OD2 A:ASP555 2.9 41.3 1.0 OD1 A:ASP555 3.1 48.1 1.0 CG A:ASP555 3.3 42.8 1.0 CG A:ASP551 3.3 44.8 1.0 CG A:ASP352 3.6 40.9 1.0 C A:ASP551 3.8 41.3 1.0 OD2 A:ASP551 4.1 41.8 1.0 CA A:ASP551 4.2 40.2 1.0 NZ A:LYS257 4.2 43.6 1.0 OD1 A:ASP352 4.3 39.7 1.0 CB A:ASP551 4.4 39.7 1.0 OG1 A:THR554 4.5 41.7 1.0 CB A:ASP352 4.5 36.8 1.0 CB A:ASP555 4.6 34.9 1.0 N A:TYR552 5.0 40.0 1.0

Magnesium binding site 2 out of 2 in the A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:38.4 occ:1.00 OD1 B:ASP551 2.1 38.2 1.0 OD2 B:ASP352 2.5 38.2 1.0 OD1 B:ASP555 2.6 43.6 1.0 CG B:ASP551 3.2 38.9 1.0 O B:ASP551 3.4 30.3 1.0 CG B:ASP555 3.6 38.0 1.0 CG B:ASP352 3.7 34.6 1.0 OD2 B:ASP551 3.7 41.0 1.0 OD2 B:ASP555 3.8 38.5 1.0 NZ B:LYS257 3.8 38.2 1.0 OD1 B:ASP352 4.2 32.2 1.0 C B:ASP551 4.4 37.0 1.0 CB B:ASP551 4.5 31.8 1.0 CA B:ASP551 4.6 38.1 1.0 CB B:ASP352 4.8 34.8 1.0 CB B:ASP555 4.9 29.5 1.0

P.Wang, G.P.Zhu, P.Song, S.P.Huang. A Novel Dimeric Isocitrate Dehydrogenase From Acinetobacter Baumannii To Be Published.