Magnesium in PDB 5z1z: The Apo-Structure of D-Lactate Dehydrogenase From Escherichia Coli

The structure of The Apo-Structure of D-Lactate Dehydrogenase From Escherichia Coli, PDB code: 5z1z was solved by N.Furukawa, A.Miyanaga, M.Nakajima, H.Taguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.24 / 1.97
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	139.600, 150.490, 62.760, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 22.7

The binding sites of Magnesium atom in the The Apo-Structure of D-Lactate Dehydrogenase From Escherichia Coli (pdb code 5z1z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Apo-Structure of D-Lactate Dehydrogenase From Escherichia Coli, PDB code: 5z1z:

Magnesium binding site 1 out of 1 in the The Apo-Structure of D-Lactate Dehydrogenase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Apo-Structure of D-Lactate Dehydrogenase From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:39.5 occ:1.00 O A:HOH546 1.9 38.2 1.0 OE2 A:GLU21 2.1 30.6 1.0 O A:HOH543 2.3 34.0 1.0 O A:HOH534 2.3 37.9 1.0 CD A:GLU21 3.1 31.8 1.0 OE1 A:GLU21 3.3 31.7 1.0 O A:HOH544 4.1 29.8 1.0 CG A:GLU21 4.4 30.3 1.0 O A:HOH516 4.5 35.3 1.0

N.Furukawa, A.Miyanaga, M.Nakajima, H.Taguchi. Structural Basis of Sequential Allosteric Transitions in Tetrameric D-Lactate Dehydrogenases From Three Gram-Negative Bacteria. Biochemistry V. 57 5388 2018.
ISSN: ISSN 1520-4995
PubMed: 30149697
DOI: 10.1021/ACS.BIOCHEM.8B00557