Magnesium in PDB 5z2m: Structure of ORP1L/RAB7 Complex

The structure of Structure of ORP1L/RAB7 Complex, PDB code: 5z2m was solved by X.L.Ma, K.Liu, J.Li, H.H.Li, J.Li, C.L.Yang, H.H.Liang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.59 / 2.14
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.222, 109.626, 77.811, 90.00, 99.94, 90.00
R / Rfree (%)	18.2 / 20.9

The binding sites of Magnesium atom in the Structure of ORP1L/RAB7 Complex (pdb code 5z2m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of ORP1L/RAB7 Complex, PDB code: 5z2m:

Magnesium binding site 1 out of 1 in the Structure of ORP1L/RAB7 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of ORP1L/RAB7 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:30.3 occ:1.00 OG1 A:THR40 2.0 28.9 1.0 OG1 A:THR22 2.0 23.9 1.0 O A:HOH313 2.0 29.7 1.0 O1B A:GTP202 2.0 24.8 1.0 O1G A:GTP202 2.1 28.6 1.0 CB A:THR40 3.1 29.5 1.0 CB A:THR22 3.2 31.2 1.0 PG A:GTP202 3.2 30.6 1.0 PB A:GTP202 3.3 28.7 1.0 O3B A:GTP202 3.5 34.4 1.0 N A:THR40 3.8 29.8 1.0 O2G A:GTP202 3.9 26.7 1.0 N A:THR22 3.9 28.9 1.0 O2A A:GTP202 4.0 28.1 1.0 OD2 A:ASP63 4.0 29.3 1.0 CA A:THR40 4.0 30.5 1.0 CA A:THR22 4.1 34.5 1.0 OD1 A:ASP63 4.1 30.3 1.0 CG2 A:THR22 4.2 28.8 1.0 CG2 A:THR40 4.2 28.5 1.0 O2B A:GTP202 4.3 28.4 1.0 O A:HOH359 4.3 39.0 1.0 O3A A:GTP202 4.4 28.5 1.0 O3G A:GTP202 4.4 35.1 1.0 CG A:ASP63 4.4 33.2 1.0 O A:THR64 4.5 25.5 1.0 PA A:GTP202 4.6 30.0 1.0 O A:LYS38 4.6 36.1 1.0 C A:ALA39 4.8 34.0 1.0 O1A A:GTP202 4.8 28.0 1.0

X.Ma, K.Liu, J.Li, H.Li, J.Li, Y.Liu, C.Yang, H.Liang. A Non-Canonical Gtpase Interaction Enables ORP1L-RAB7-Rilp Complex Formation and Late Endosome Positioning. J. Biol. Chem. V. 293 14155 2018.
ISSN: ESSN 1083-351X
PubMed: 30012887
DOI: 10.1074/JBC.RA118.001854